Factsheet for Solyc05g014030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027900	Potato	cytosol	98.31	98.31
VIT_01s0137g00230.t01	Wine grape	cytosol	83.68	83.52
KRG97505	Soybean	cytosol	83.68	83.36
KRH31377	Soybean	cytosol	82.18	82.49
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	26.27	80.92
CDY39172	Canola	cytosol	73.55	79.67
AT3G26100.5	Thale cress	cytosol, plastid	79.36	79.51
CDY04192	Canola	cytosol	73.17	79.27
CDX83586	Canola	cytosol, plastid	78.42	79.02
Bra025182.1-P	Field mustard	cytosol	78.24	78.83
CDY13609	Canola	cytosol	78.05	78.64
GSMUA_AchrUn_...	Banana	cytosol, plastid	79.17	78.58
Os12t0284000-01	Rice	cytosol	77.86	77.72
Bra017335.1-P	Field mustard	cytosol	77.11	77.4
CDX99731	Canola	cytosol, plastid	76.17	75.89
HORVU5Hr1G034530.6	Barley	cytosol	75.8	75.66
KRH59226	Soybean	cytosol	75.61	75.47
GSMUA_Achr9P02110_001	Banana	plastid	75.61	74.91
Bra036349.1-P	Field mustard	cytosol, plastid	75.8	73.59
CDY40988	Canola	cytosol, plastid	75.42	73.22
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	29.64	70.85
Solyc07g063300.2.1	Tomato	plasma membrane	24.02	26.34
Solyc05g018620.2.1	Tomato	cytosol	14.26	24.76
Solyc02g085780.2.1	Tomato	cytosol	16.89	23.08
Solyc05g056590.2.1	Tomato	cytosol	11.82	22.91
Solyc05g006940.2.1	Tomato	cytosol	16.32	22.08
Solyc07g042970.2.1	Tomato	mitochondrion	9.01	19.92
Solyc02g089220.2.1	Tomato	mitochondrion	11.63	18.79
Solyc07g042980.2.1	Tomato	cytosol	7.88	17.28
Solyc02g036390.1.1	Tomato	cytosol	21.2	14.39
Solyc03g116360.1.1	Tomato	cytosol	24.77	13.95
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	25.89	13.68
Solyc11g065120.1.1	Tomato	cytosol	26.64	12.58
Solyc12g099740.1.1	Tomato	nucleus	23.45	12.2
Solyc04g071040.2.1	Tomato	cytosol	24.95	11.81
Solyc03g005590.1.1	Tomato	cytosol, plastid	23.08	11.48
Solyc02g081250.1.1	Tomato	cytosol	22.89	5.85
Solyc05g007280.2.1	Tomato	cytosol	0.19	1.69

Protein Annotations

EnsemblPlants:Solyc05g014030.2.1	EnsemblPlantsGene:Solyc05g014030.2	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI00027662AC	UniProt:K4BYC3	MapMan:35.1

Description

No Description!

Coordinates

chr5:-:7532703..7535318

Molecular Weight (calculated)

57114.6 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.105

Length

533 amino acids

Sequence
(BLAST)

001: MDASTSGTSS VQYHNIAEQP IAATIVNSTF QRQVRHCFGN ATPGEFPLSA NPSIVLHVLT GCNLDPQDLA TLEATCSFFR QPANFAPDNE LSLAELAALD
101: MCRKRAIFKP MTQEQCHDLK QKCGGSWKLV LRFLLAGEAC SRREKSHAVA GPGHSIAVSS KGVVYSFGSN SSGQLGNGTT EEEWRPHPIR SLQGVRVIQA
201: AVGAGRTMLI SDTGKVYAFG KESFGEAEYG VQGSKVVTTP QLVESLKDIF VVQAAIGNFF TAVLSREGRV YTFSWGNEIK LGHQTEQADL EPRPLLGALE
301: NIPVVQIAAG YCYLLALACQ PSGMSVYSVG CGLGGKLGHG TRTDEKVPRL IEQFQTLNIQ PAVVAAGAWH AAVVGKDGRV CTWGWGRYGC LGHGNEDCES
401: APKVVEALSN VKAVYVATGD YTTFVVSDDG NVYSFGCGES SSLGHNTAAA EAQGNRHSNV LFPEVVTTLK QLNERVVQIS LTNSIYWNAH TFALTESGKL
501: YAFGAGDKGQ LGVELSVNQT ERAIPERVDI DLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.