Factsheet for Solyc07g042980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	74.9	55.32
GSMUA_Achr8P06920_001	Banana	cytosol	67.08	49.85
HORVU5Hr1G089510.1	Barley	cytosol	63.37	42.78
KRH46563	Soybean	mitochondrion	74.07	40.54
CDY51633	Canola	mitochondrion	71.6	39.19
Bra013002.1-P	Field mustard	mitochondrion	71.19	39.05
CDY02190	Canola	mitochondrion	71.19	39.05
AT5G60870.2	Thale cress	mitochondrion	70.78	38.05
Os09t0560450-01	Rice	mitochondrion	65.02	36.16
Zm00001d021372_P001	Maize	mitochondrion	64.2	36.11
EER97183	Sorghum	mitochondrion	64.2	36.11
TraesCS5D01G373300.1	Wheat	mitochondrion	63.79	35.39
TraesCS5B01G366300.1	Wheat	mitochondrion	63.79	35.39
TraesCS5A01G364400.2	Wheat	mitochondrion	62.96	34.93
Solyc05g018620.2.1	Tomato	cytosol	22.22	17.59
Solyc05g056590.2.1	Tomato	cytosol	18.93	16.73
Os04t0226400-01	Rice	plastid	14.4	16.13
Solyc02g089220.2.1	Tomato	mitochondrion	19.75	14.55
Solyc02g085780.2.1	Tomato	cytosol	20.16	12.56
Solyc05g006940.2.1	Tomato	cytosol	18.11	11.17
Solyc02g036390.1.1	Tomato	cytosol	30.04	9.3
Solyc07g063300.2.1	Tomato	plasma membrane	17.7	8.85
Solyc05g014030.2.1	Tomato	cytosol	17.28	7.88
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	29.63	7.14
Solyc04g071040.2.1	Tomato	cytosol	32.1	6.93
Solyc12g099740.1.1	Tomato	nucleus	28.81	6.83
Solyc03g116360.1.1	Tomato	cytosol	26.34	6.77
Solyc03g005590.1.1	Tomato	cytosol, plastid	29.63	6.72
Solyc11g065120.1.1	Tomato	cytosol	28.81	6.2
Solyc07g042970.2.1	Tomato	mitochondrion	3.7	3.73
Solyc02g081250.1.1	Tomato	cytosol	28.4	3.31
Solyc05g007280.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc07g042980.2.1	EnsemblPlantsGene:Solyc07g042980.2	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF324	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000276C1ED	UniProt:K4CEF8	MapMan:16.12.2.2.2

Description

No Description!

Coordinates

chr7:+:56516766..56522938

Molecular Weight (calculated)

25598.3 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.220

Length

243 amino acids

Sequence
(BLAST)

001: MTTSERNSIY VGNFQVFSNG ELYTWGRDEG DGRLGLGPGR GHNEAGGLSI PLKVKSLPTG VAAVSCGGFF TMALSEEGEL WNWGANSNYE LGRGDKLGGW
101: KPQPVPSLKG VRVIQIASGG YHSLALTDKG EVLSWGHGGH GQLGNSSLQN QKVPIQVEAL AHEKVIYISC GGSSSAAITD GGKLYMWGYA KDCQLGVPGL
201: PEKQSSPIEV KFLMEDDGLG NHNVLSVAIG ASHAMCLVSR SGH

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.