Factsheet for TraesCS5A01G364400.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089510.1	Barley	cytosol	80.37	97.78
TraesCS5B01G366300.1	Wheat	mitochondrion	97.72	97.72
TraesCS5D01G373300.1	Wheat	mitochondrion	97.26	97.26
Os09t0560450-01	Rice	mitochondrion	87.44	87.64
EER97183	Sorghum	mitochondrion	83.79	84.95
Zm00001d021372_P001	Maize	mitochondrion	82.65	83.8
GSMUA_Achr8P06920_001	Banana	cytosol	55.25	74.01
Solyc07g042980.2.1	Tomato	cytosol	34.93	62.96
Bra013002.1-P	Field mustard	mitochondrion	62.33	61.63
CDY02190	Canola	mitochondrion	62.33	61.63
KRH46563	Soybean	mitochondrion	62.33	61.49
CDY51633	Canola	mitochondrion	61.64	60.81
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	45.21	60.18
AT5G60870.2	Thale cress	mitochondrion	60.05	58.19
Os04t0226400-01	Rice	plastid	27.85	56.22
Solyc07g042970.2.1	Tomato	mitochondrion	28.54	51.87
TraesCS2A01G306400.3	Wheat	cytosol	24.66	24.38
TraesCS7A01G284800.1	Wheat	cytosol	21.23	23.31
TraesCS6A01G153100.1	Wheat	golgi	23.97	22.34
TraesCS3A01G319000.1	Wheat	cytosol	18.95	20.24
TraesCS1A01G076400.1	Wheat	mitochondrion	18.49	19.33
TraesCS5A01G173400.1	Wheat	cytosol	19.63	17.95
TraesCS2A01G236300.4	Wheat	cytosol	19.41	17.31
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	26.94	13.01
TraesCS3A01G512900.1	Wheat	cytosol	25.8	12.4
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	29.45	12.26
TraesCS2A01G581400.1	Wheat	cytosol	29.45	12.06
TraesCS1A01G240600.2	Wheat	cytosol	29.68	11.85
TraesCS6A01G261000.1	Wheat	cytosol	24.43	11.72
TraesCS1A01G366800.1	Wheat	cytosol	27.4	11.49
TraesCS7A01G185400.1	Wheat	cytosol	26.48	11.46

Protein Annotations

EnsemblPlants:TraesCS5A01G364400.2	EnsemblPlantsGene:TraesCS5A01G364400	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF320	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	MapMan:16.12.2.2.2	:	:

Description

No Description!

Coordinates

chr5A:+:564600524..564604299

Molecular Weight (calculated)

45377.1 Da

IEP (calculated)

7.389

GRAVY (calculated)

0.009

Length

438 amino acids

Sequence
(BLAST)

001: MLRRLLPLHR RCYSASATSS GAAPTLYSGG DHPVSLLSWG RGASGQLGGG KEERRLYPAP VARLLLPVPS PVLPPTPGRL PPAAGTEAAG GVEVGISCGL
101: FHSALLVDGA AWVWGKGDGG RLGLGDEASA FVPRANPNLA GLRVLALGGI HSAALTASGD VLTWGYGGFG ALGHYVYHRE LLPRKVKGPW EGKIVHIATS
201: GAHTAAITES GCDLYTWGRD EGDGRLGLGS GGGPGEAGSL SVPSKVSVLP VPVAAVACGG FFTLALTSDG QLWSWGANSN FELGRGSNSS DWRPQIVPSL
301: KNVHVIQVAC GGYHSLALTD EGEVLSWGHG GHGQLGHPTI QNHRVPLAIK ALSEERIVYI ACGGSTSAAI SEKGDLYIWG NARDCQLGVP DLPEVQPLPV
401: KVNFLADCDE DPSPPRVISV AIGASHAMCL VSRQQIQK

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.