Factsheet for TraesCS5B01G366300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089510.1	Barley	cytosol	81.05	98.61
TraesCS5D01G373300.1	Wheat	mitochondrion	98.4	98.4
TraesCS5A01G364400.2	Wheat	mitochondrion	97.72	97.72
Os09t0560450-01	Rice	mitochondrion	88.36	88.56
EER97183	Sorghum	mitochondrion	85.16	86.34
Zm00001d021372_P001	Maize	mitochondrion	83.33	84.49
GSMUA_Achr8P06920_001	Banana	cytosol	55.25	74.01
Solyc07g042980.2.1	Tomato	cytosol	35.39	63.79
Bra013002.1-P	Field mustard	mitochondrion	63.01	62.3
CDY02190	Canola	mitochondrion	63.01	62.3
KRH46563	Soybean	mitochondrion	63.01	62.16
CDY51633	Canola	mitochondrion	62.33	61.49
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	46.12	61.4
AT5G60870.2	Thale cress	mitochondrion	60.73	58.85
Os04t0226400-01	Rice	plastid	28.31	57.14
Solyc07g042970.2.1	Tomato	mitochondrion	28.77	52.28
TraesCS6B01G180900.1	Wheat	cytosol	22.6	24.44
TraesCS2B01G323100.1	Wheat	unclear	24.43	24.21
TraesCS7B01G200200.1	Wheat	cytosol	21.0	23.65
TraesCS3B01G347100.2	Wheat	cytosol	19.18	20.64
TraesCS5B01G170800.1	Wheat	cytosol	19.63	17.92
TraesCS2B01G254900.2	Wheat	cytosol	18.95	17.15
TraesCS2B01G360200.1	Wheat	cytosol	19.18	15.44
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	26.94	13.01
TraesCS3B01G581600.2	Wheat	cytosol	26.03	12.5
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	29.22	12.42
TraesCS2B01G609200.1	Wheat	cytosol	29.22	11.96
TraesCS1B01G252700.2	Wheat	cytosol	29.68	11.87
TraesCS3B01G543500.1	Wheat	cytosol	29.45	11.85
TraesCS7B01G090600.1	Wheat	cytosol	26.71	11.47
TraesCS1B01G384600.1	Wheat	cytosol	26.94	11.25
TraesCS6B01G288400.1	Wheat	cytosol	24.89	10.22

Protein Annotations

MapMan:16.12.2.2.2	Gene3D:2.130.10.30	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0010224	GO:GO:0038023	GO:GO:0042803
InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	EnsemblPlantsGene:TraesCS5B01G366300
EnsemblPlants:TraesCS5B01G366300.1	InterPro:UVR8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:+:544909729..544913600

Molecular Weight (calculated)

45311.0 Da

IEP (calculated)

7.185

GRAVY (calculated)

-0.014

Length

438 amino acids

Sequence
(BLAST)

001: MLRRLLPLPR RCYSASATSS GAAPTLYSGG DHPVSLLSWG RGASGQLGGG KEERRLYPAP VARLLLPVPS PVLPPTPGRL PPAAGTEAAG GVEVGISCGL
101: FHSALLVDGA AWVWGKGDGG RLGLGDEASA FVPRANPNLA GLRVLALGGI HSAALTAPGD VFTWGYGGFG ALGHYVYHRE LLPRKVNGPW EGKIAHIATS
201: GAHTAAITES GCELYTWGRD EGDGRLGLGS GGGPGEAGSL SVPSKVSALP VPVAAVACGG FFTLALTSDG QLWSWGANSN FELGRGSNSS DWRPQIVPSL
301: KNVHVIQVAC GGYHSLALTD EGEVLSWGHG GHGQLGHPTI QNHRIPLAIK ALSEERIVYI ACGGSTSAAI SEKGDLYMWG NARDCQLGVP DLPEVQPLPV
401: KVNFLADGDE DPSPPRVISV AIGASHAMCL VSRQQIQK

Best Arabidopsis Sequence Match ( AT5G60870.1 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.