Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G457000.1 | Wheat | cytosol, nucleus, peroxisome | 95.83 | 96.58 |
| TraesCS2A01G456700.1 | Wheat | cytosol, nucleus, peroxisome | 95.93 | 94.01 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 94.28 | 84.16 |
| Os04t0583700-00 | Rice | cytosol | 72.45 | 72.24 |
| KXG26989 | Sorghum | cytosol | 68.38 | 66.07 |
| Zm00001d002544_P004 | Maize | cytosol, endoplasmic reticulum, nucleus | 67.31 | 62.52 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 62.17 | 60.08 |
| GSMUA_Achr1P02140_001 | Banana | cytosol | 44.42 | 51.29 |
| GSMUA_Achr5P11650_001 | Banana | cytosol | 45.2 | 48.04 |
| CDX87986 | Canola | cytosol | 9.51 | 47.57 |
| Solyc02g036390.1.1 | Tomato | cytosol | 34.63 | 45.48 |
| AT1G65920.1 | Thale cress | cytosol | 40.54 | 41.55 |
| VIT_04s0079g00290.t01 | Wine grape | cytosol | 40.45 | 41.49 |
| CDY31624 | Canola | cytosol | 39.19 | 41.1 |
| Bra038181.1-P | Field mustard | cytosol | 39.57 | 40.72 |
| PGSC0003DMT400043094 | Potato | nucleus | 42.1 | 40.33 |
| CDX87989 | Canola | cytosol | 39.09 | 40.22 |
| KRH30884 | Soybean | cytosol | 41.71 | 40.04 |
| KRG98005 | Soybean | cytosol | 41.51 | 40.0 |
| TraesCS1B01G252700.2 | Wheat | cytosol | 39.28 | 36.99 |
| TraesCS3B01G543500.1 | Wheat | cytosol | 38.22 | 36.18 |
| TraesCS7B01G090600.1 | Wheat | cytosol | 34.34 | 34.71 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 34.82 | 33.55 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 29.39 | 33.41 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 33.95 | 33.37 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 29.1 | 32.89 |
| TraesCS2B01G323100.1 | Wheat | unclear | 13.0 | 30.32 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 12.42 | 29.22 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 11.35 | 28.89 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 9.6 | 25.45 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 9.6 | 24.32 |
| TraesCS2B01G254900.2 | Wheat | cytosol | 11.15 | 23.76 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 10.77 | 23.12 |
| TraesCS2B01G360200.1 | Wheat | cytosol | 11.64 | 22.06 |
| Solyc02g081250.1.1 | Tomato | cytosol | 41.9 | 20.7 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:Brevis_radix_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR011993 |
| InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 |
| InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 |
| PANTHER:PTHR22870 | PANTHER:PTHR22870:SF311 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 |
| SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS2B01G478900 | EnsemblPlants:TraesCS2B01G478900.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 | TIGR:cd13365 | SEG:seg | : |
Description
No Description!
Coordinates
chr2B:-:676126426..676131391
Molecular Weight (calculated)
113368.0 Da
IEP (calculated)
9.185
GRAVY (calculated)
-0.390
Length
1031 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGSFDGRMP TRGVEQAIVA LKKGAHLLKC GKRGKPKFCP FRLSSDEKTL VWYSKDREKH LSLNSVSTVI LGQKTTNFYR QRWPEKEHQS LSLVYRNGEC
0101: SLDLICRDRD QAECWHLGLT ALISGPSSPF SSVGSKSSRQ MTSCTSTPRS YIQRKSKLSA VHDTPRHKQV YPSYGSPRMT QKDLFGGYLD CSEALFYQRQ
0201: RTFSDVDSYL ERLSPKVANP VRHSLKDILV ANNKHKTQTI SRTPKVKAFE GPRAACRLDS LKDVFLWGDV VGSALDSEDT PKALPRLVGS TKMLDVQSIA
0301: CGENHAAIIT KQGEVFSWGK ESSGRLGHKV NGSAPCPKMV EPLASVHVKA VAFGSKHTCA VTVSGELFEW GEGAHSLGLL NNWHGRNQWL PHKLFGPMDN
0401: ISVSKIACGE WHTAIITSSG QLFTYGDGTF GVLGHGDTQG IARPKEVESL KGLRVKSVAC GPWHTAAIVE GMSSVKCNAP IGNLFTWGDA DKGKLGHADK
0501: KMKLVPTCVD SLISHDFVQV SCGMALTVVL TSNGMVFTIG SSKHGQLGNP QADGESVCTV GGILKNEFVT EISSGSSHVA ALTMNGKVFT WGKGADGQLG
0601: LGDYANRSSP TLVEALEGRQ VQSIACGSNF GAAICLHKGI SVKDQPICGG CQMVFNFTRK KHNCYNCGSM FCNSCSSNKI INAALAPDRN RRYRVCDVCF
0701: CQLEKILYSG EVKPQPKISR GEMFKAEIMA YTPKLSRLFK EANLIVEKMA SVQGPNQRNV DSAVPIQVKT ERWGQVECPA RFISAQDNFR HQLVPSNQMS
0801: GVSFSQRMHD AVGLKAGNPL RQSTDSQRDE LSMMERILTE EVKQLRSQVT ALAEQCQQKN HVVQVYKQRL DETWLIVRDE AAKCKAAKDI IKVLTNQCNA
0901: LSAKLSVGQQ PENLKMTPNS IPEQAPSPGA TVPADGSFSH RNIARTFDRD GYTTEADSMD TPVEGVIEQI ERGVYVTLAV SPDGRKDIRR IRFSRKHFGE
1001: KAAQCWWEEN KSRVYANYSV EQAATPHLNR A
0101: SLDLICRDRD QAECWHLGLT ALISGPSSPF SSVGSKSSRQ MTSCTSTPRS YIQRKSKLSA VHDTPRHKQV YPSYGSPRMT QKDLFGGYLD CSEALFYQRQ
0201: RTFSDVDSYL ERLSPKVANP VRHSLKDILV ANNKHKTQTI SRTPKVKAFE GPRAACRLDS LKDVFLWGDV VGSALDSEDT PKALPRLVGS TKMLDVQSIA
0301: CGENHAAIIT KQGEVFSWGK ESSGRLGHKV NGSAPCPKMV EPLASVHVKA VAFGSKHTCA VTVSGELFEW GEGAHSLGLL NNWHGRNQWL PHKLFGPMDN
0401: ISVSKIACGE WHTAIITSSG QLFTYGDGTF GVLGHGDTQG IARPKEVESL KGLRVKSVAC GPWHTAAIVE GMSSVKCNAP IGNLFTWGDA DKGKLGHADK
0501: KMKLVPTCVD SLISHDFVQV SCGMALTVVL TSNGMVFTIG SSKHGQLGNP QADGESVCTV GGILKNEFVT EISSGSSHVA ALTMNGKVFT WGKGADGQLG
0601: LGDYANRSSP TLVEALEGRQ VQSIACGSNF GAAICLHKGI SVKDQPICGG CQMVFNFTRK KHNCYNCGSM FCNSCSSNKI INAALAPDRN RRYRVCDVCF
0701: CQLEKILYSG EVKPQPKISR GEMFKAEIMA YTPKLSRLFK EANLIVEKMA SVQGPNQRNV DSAVPIQVKT ERWGQVECPA RFISAQDNFR HQLVPSNQMS
0801: GVSFSQRMHD AVGLKAGNPL RQSTDSQRDE LSMMERILTE EVKQLRSQVT ALAEQCQQKN HVVQVYKQRL DETWLIVRDE AAKCKAAKDI IKVLTNQCNA
0901: LSAKLSVGQQ PENLKMTPNS IPEQAPSPGA TVPADGSFSH RNIARTFDRD GYTTEADSMD TPVEGVIEQI ERGVYVTLAV SPDGRKDIRR IRFSRKHFGE
1001: KAAQCWWEEN KSRVYANYSV EQAATPHLNR A
0001: MGEQQISVTV PRDRTDEQAI LALKKGAQLL KCRRRGNPKF CPFKLSMDEK YLIWYSGEEE RQLRLSSVIT IVRGQITPNF QKQAQSDRKE QSFSLIYANG
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI
0101: EHTLDLICKD KAQADSWFKG LRAVITKHHN IRNSVNHRSS RGAQSCINSP AGFMRRKQNL GLLEETPDVT QIRSLCGSPS TLLEERCLSN GLSCSSDSFA
0201: ESDALGPVSS YYETDYDFRN SDCDRSTGSE LCRFSSQRFA ASPPLSIITQ PVTRSNVLKD IMIWGAITGL IDGSKNQNDA LSPKLLESAT MFDVQSISLG
0301: AKHAALVTRQ GEVFCWGNGN SGKLGLKVNI DIDHPKRVES LEDVAVRSVA CSDHQTCAVT ESGELYLWGI DGGTIEQSGS QFLTRKISDV LGGSLTVLSV
0401: ACGAWHTAIV TSSGQLFTYG SGTFGVLGHG SLESVTKPKE VESLRRMKVI SVSCGPWHTA AIVETANDRK FYNAKSCGKL FTWGDGDKGR LGHADSKRKL
0501: VPTCVTELID HDFIKVSCGW TLTVALSISG TVYTMGSSIH GQLGCPRAKD KSVNVVLGNL TRQFVKDIAS GSHHVAVLTS FGNVYTWGKG MNGQLGLGDV
0601: RDRNSPVLVE PLGDRLVESI ACGLNLTAAI CLHKEISLND QTACSSCKSA FGFTRRKHNC YNCGLLFCNA CSSKKAVNAS LAPNKSKLSR VCDSCFDHLW
0701: SITEFSRNVK MDNHTPRMQM VTRRVSEDLT EKQSENEMQN LPQANRSSDG QPRWGQVSGP SLFRFDKIST SSSLNLSVSA RRTSSTKIST SSESNKILTE
0801: EIERLKAVIK NLQRQCELGN EKMEECQQEL DKTWEVAKEE AEKSKAAKEI IKALASKLQA NKEKPSNPLK TGIACNPSQV SPIFDDSMSI PYLTPITTAR
0901: SQHETKQHVE KCVTKSSNRD SNIKLLVDAS PAITRTGYLQ NETQDSSAEQ VEQYEPGVYI TFTALPCGQK TLKRVRFSRK RFSEKEAQRW WEEKQVLVYN
1001: KYDAEI
Arabidopsis Description
F12P19.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRZ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.