Factsheet for TraesCS2B01G323100.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	TraesCS6A01G326100.1	AT2G32950.1	19165148
AT5G63860.1	TraesCS6B01G356400.1	AT2G32950.1	19165148
AT5G63860.1	TraesCS6D01G305800.1	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G304900.2	Wheat	cytosol	99.09	98.87
TraesCS2A01G306400.3	Wheat	cytosol	98.42	98.19
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	97.74	97.96
Os04t0435700-01	Rice	plasma membrane	90.27	88.08
EES10837	Sorghum	cytosol	86.43	86.23
Zm00001d003632_P003	Maize	extracellular	85.97	85.78
GSMUA_Achr6P17690_001	Banana	cytosol	76.47	76.99
GSMUA_Achr3P19000_001	Banana	nucleus	77.6	76.39
TraesCS6B01G180900.1	Wheat	cytosol	69.23	75.56
VIT_07s0031g02560.t01	Wine grape	cytosol	75.11	74.61
Solyc05g018620.2.1	Tomato	cytosol	51.58	74.27
CDY43762	Canola	cytosol	70.81	73.13
Bra024242.1-P	Field mustard	cytosol	67.65	72.75
Bra029198.1-P	Field mustard	cytosol	67.65	72.57
Bra037755.1-P	Field mustard	cytosol	68.1	72.36
AT5G63860.1	Thale cress	cytosol	71.95	72.27
CDY31347	Canola	cytosol	70.81	71.79
CDX81201	Canola	cytosol	71.27	71.59
CDY60046	Canola	cytosol	71.95	70.98
CDX84451	Canola	cytosol	71.04	70.4
CDY39843	Canola	cytosol	62.67	68.56
KRH59606	Soybean	cytosol	64.93	65.68
KRH53944	Soybean	plastid	68.33	63.71
KRH63996	Soybean	nucleus	68.33	62.66
KRH40960	Soybean	cytosol	45.25	59.17
TraesCS7B01G200200.1	Wheat	cytosol	23.08	26.22
TraesCS5B01G366300.1	Wheat	mitochondrion	24.21	24.43
TraesCS2B01G254900.2	Wheat	cytosol	25.79	23.55
TraesCS5B01G170800.1	Wheat	cytosol	23.98	22.08
TraesCS3B01G347100.2	Wheat	cytosol	20.14	21.87
TraesCS2B01G360200.1	Wheat	cytosol	24.66	20.04
TraesCS3B01G581600.2	Wheat	cytosol	32.13	15.57
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	31.0	15.1
TraesCS3B01G543500.1	Wheat	cytosol	36.43	14.78
TraesCS1B01G252700.2	Wheat	cytosol	35.52	14.34
TraesCS7B01G090600.1	Wheat	cytosol	31.67	13.73
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	30.32	13.0
TraesCS2B01G609200.1	Wheat	cytosol	31.0	12.8
TraesCS1B01G384600.1	Wheat	cytosol	30.32	12.77
TraesCS6B01G288400.1	Wheat	cytosol	29.86	12.37

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0010224	GO:GO:0038023	GO:GO:0042803
InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	EnsemblPlantsGene:TraesCS2B01G323100
EnsemblPlants:TraesCS2B01G323100.1	InterPro:UVR8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:-:461735986..461741015

Molecular Weight (calculated)

46869.8 Da

IEP (calculated)

5.816

GRAVY (calculated)

-0.260

Length

442 amino acids

Sequence
(BLAST)

001: MDAAISAAHE APPAVVLVSA GASHSVALLA GNVLCTWGRG EDGQLGHGDA EDRLVPTVIS GFDAPGITSV ICGADHTTAY SEDEHQVYSW GWGDFGRLGH
101: GNSTDVFTPQ PVKALQGIKI KQLACGDSHC LAVTMAGEVL SWGRNQNGQL GLGTTEDSLL PQTIQAFVGI SVKMIAAGAE HTAAVTEDGE IYGWGWGRYG
201: NLGLGDRNDR FVPEKVSSVE GEKMVLVACG WRHTITVSSS GSLYTYGWSK YGQLGHGDFE DHLVPHKVEA LKDSSTSQIS GGWRHTMALT SDGKLYGWGW
301: NKFGQVGAGD NADHCSPAQV NFPEEQKVAQ VACGWRHTLA FTEKKNVFAW GRGTSGQLGH GEIVDRNTPV MIDALSPDGP GCKKLESSAA IPFAAKIWVS
401: PSERYALVPD EKVAKPGDVS ARGNGADASV PENDVKRMRV SS

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.