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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS2A01G187000.1
TraesCS2A01G306400.3
TraesCS2A01G340000.1
TraesCS2A01G348900.1
TraesCS2A01G366100.2
TraesCS2A01G370300.1
TraesCS2A01G370400.1
TraesCS2A01G370700.1
TraesCS2A01G388500.1
TraesCS2B01G220200.1
TraesCS2B01G323100.1
TraesCS2B01G337900.1
TraesCS2B01G367300.2
TraesCS2B01G387300.1
TraesCS2B01G387500.1
TraesCS2B01G387700.1
TraesCS2B01G387800.1
TraesCS2B01G406600.2
TraesCS2D01G304900.2
TraesCS2D01G317500.1
TraesCS2D01G347300.1
TraesCS2D01G366800.1
TraesCS2D01G366900.1
TraesCS2D01G367000.1
TraesCS2D01G386300.1
TraesCS3A01G284700.2
TraesCS3B01G318600.1
TraesCS3D01G284500.2
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1
TraesCS5A01G425300.1
TraesCS5B01G427400.1
TraesCS5D01G433700.3
TraesCS6A01G037700.1
TraesCS6A01G153100.1
TraesCS6A01G203300.1
TraesCS6A01G216400.1
TraesCS6A01G223700.1
TraesCS6A01G236700.1
TraesCS6A01G239300.1
TraesCS6A01G289400.1
TraesCS6A01G326100.1
TraesCS6B01G053100.1
TraesCS6B01G180900.1
TraesCS6B01G224100.2
TraesCS6B01G246500.1
TraesCS6B01G257600.2
TraesCS6B01G265200.1
TraesCS6B01G285200.1
TraesCS6B01G319500.1
TraesCS6B01G356400.1
TraesCS6D01G043600.1
TraesCS6D01G142500.1
TraesCS6D01G187200.1
TraesCS6D01G199200.1
TraesCS6D01G211700.1
TraesCS6D01G219300.1
TraesCS6D01G221700.1
TraesCS6D01G269500.1
TraesCS6D01G305800.1
TraesCS7A01G211300.1
TraesCS7A01G241300.1
TraesCS7A01G315600.1
TraesCS7A01G383400.3
TraesCS7B01G118300.1
TraesCS7B01G136800.1
TraesCS7B01G216600.2
TraesCS7B01G286300.1
TraesCS7D01G213000.2
TraesCS7D01G240300.1
TraesCS7D01G312600.2
TraesCS7D01G379900.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G32950.1 TraesCS6A01G223700.1 AT1G04400.1 11509693
AT2G32950.1 TraesCS6B01G257600.2 AT1G04400.1 11509693
AT2G32950.1 TraesCS6D01G211700.1 AT1G04400.1 11509693
AT2G32950.1 TraesCS2A01G348900.1 AT1G06040.1 11226162
AT2G32950.1 TraesCS2A01G366100.2 AT1G06040.1 11226162
AT2G32950.1 TraesCS2B01G367300.2 AT1G06040.1 11226162
AT2G32950.1 TraesCS2D01G347300.1 AT1G06040.1 11226162
AT2G32950.1 TraesCS6A01G216400.1 AT1G06040.1 11226162
AT2G32950.1 TraesCS6B01G246500.1 AT1G06040.1 11226162
AT2G32950.1 TraesCS6D01G199200.1 AT1G06040.1 11226162
AT2G32950.1 TraesCS3A01G284700.2 AT1G53090.1 12887588
AT2G32950.1 TraesCS3B01G318600.1 AT1G53090.1 12887588
AT2G32950.1 TraesCS3D01G284500.2 AT1G53090.1 12887588
AT2G32950.1 TraesCS3A01G284700.2 AT1G53090.1 18812498
AT2G32950.1 TraesCS3B01G318600.1 AT1G53090.1 18812498
AT2G32950.1 TraesCS3D01G284500.2 AT1G53090.1 18812498
AT2G32950.1 TraesCS3A01G284700.2 AT1G53090.1 21798944
AT2G32950.1 TraesCS3B01G318600.1 AT1G53090.1 21798944
AT2G32950.1 TraesCS3D01G284500.2 AT1G53090.1 21798944
AT2G32950.1 TraesCS2A01G388500.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS2B01G406600.2 AT1G75540.1 17965270
AT2G32950.1 TraesCS2D01G386300.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS6A01G239300.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS6B01G285200.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS6D01G221700.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS7A01G383400.3 AT1G75540.1 17965270
AT2G32950.1 TraesCS7B01G286300.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS7D01G379900.1 AT1G75540.1 17965270
AT2G32950.1 TraesCS4A01G122500.2 AT2G18790.1 11752373
AT2G32950.1 TraesCS4B01G182400.1 AT2G18790.1 11752373
AT2G32950.1 TraesCS4D01G183400.1 AT2G18790.1 11752373
AT2G32950.1 TraesCS6A01G289400.1 AT2G24790.1 16339850
AT2G32950.1 TraesCS6B01G319500.1 AT2G24790.1 16339850
AT2G32950.1 TraesCS6D01G269500.1 AT2G24790.1 16339850
AT2G32950.1 TraesCS7A01G211300.1 AT2G24790.1 16339850
AT2G32950.1 TraesCS7B01G118300.1 AT2G24790.1 16339850
AT2G32950.1 TraesCS7D01G213000.2 AT2G24790.1 16339850
AT2G32950.1 TraesCS2A01G348900.1 AT2G31380.1 11226162
AT2G32950.1 TraesCS2A01G366100.2 AT2G31380.1 11226162
AT2G32950.1 TraesCS2B01G367300.2 AT2G31380.1 11226162
AT2G32950.1 TraesCS2D01G347300.1 AT2G31380.1 11226162
AT2G32950.1 TraesCS6A01G216400.1 AT2G31380.1 11226162
AT2G32950.1 TraesCS6B01G246500.1 AT2G31380.1 11226162
AT2G32950.1 TraesCS6D01G199200.1 AT2G31380.1 11226162
AT2G32950.1 TraesCS6A01G326100.1 AT2G32950.1 18812498
AT2G32950.1 TraesCS6B01G356400.1 AT2G32950.1 18812498
AT2G32950.1 TraesCS6D01G305800.1 AT2G32950.1 18812498
AT2G32950.1 TraesCS6A01G326100.1 AT2G32950.1 9755158
AT2G32950.1 TraesCS6B01G356400.1 AT2G32950.1 9755158
AT2G32950.1 TraesCS6D01G305800.1 AT2G32950.1 9755158
AT2G32950.1 TraesCS2A01G187000.1 AT3G13550.1 11877375
AT2G32950.1 TraesCS2B01G220200.1 AT3G13550.1 11877375
AT2G32950.1 TraesCS2A01G187000.1 AT3G13550.1 16844902
AT2G32950.1 TraesCS2B01G220200.1 AT3G13550.1 16844902
AT2G32950.1 TraesCS2A01G340000.1 AT4G08920.1 11509693
AT2G32950.1 TraesCS2B01G337900.1 AT4G08920.1 11509693
AT2G32950.1 TraesCS2D01G317500.1 AT4G08920.1 11509693
AT2G32950.1 TraesCS6A01G203300.1 AT4G08920.1 11509693
AT2G32950.1 TraesCS6B01G224100.2 AT4G08920.1 11509693
AT2G32950.1 TraesCS6D01G187200.1 AT4G08920.1 11509693
AT2G32950.1 TraesCS2A01G340000.1 AT4G08920.1 11752373
AT2G32950.1 TraesCS2B01G337900.1 AT4G08920.1 11752373
AT2G32950.1 TraesCS2D01G317500.1 AT4G08920.1 11752373
AT2G32950.1 TraesCS6A01G203300.1 AT4G08920.1 11752373
AT2G32950.1 TraesCS6B01G224100.2 AT4G08920.1 11752373
AT2G32950.1 TraesCS6D01G187200.1 AT4G08920.1 11752373
AT2G32950.1 TraesCS2A01G370300.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2A01G370400.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2A01G370700.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2B01G387300.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2B01G387500.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2B01G387700.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2B01G387800.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2D01G366800.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2D01G366900.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS2D01G367000.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS6A01G037700.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS6A01G236700.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS6B01G053100.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS6B01G265200.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS6D01G043600.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS6D01G219300.1 AT4G25560.1 12827204
AT2G32950.1 TraesCS7A01G315600.1 AT5G14250.1 14597662
AT2G32950.1 TraesCS7B01G216600.2 AT5G14250.1 14597662
AT2G32950.1 TraesCS7D01G312600.2 AT5G14250.1 14597662
AT2G32950.1 TraesCS5A01G425300.1 AT5G46210.1 16844902
AT2G32950.1 TraesCS5B01G427400.1 AT5G46210.1 16844902
AT2G32950.1 TraesCS5D01G433700.3 AT5G46210.1 16844902
AT2G32950.1 TraesCS7A01G241300.1 AT5G56280.1 14597662
AT2G32950.1 TraesCS7B01G136800.1 AT5G56280.1 14597662
AT2G32950.1 TraesCS7D01G240300.1 AT5G56280.1 14597662
AT2G32950.1 TraesCS2A01G306400.3 AT5G63860.1 19165148
AT2G32950.1 TraesCS2B01G323100.1 AT5G63860.1 19165148
AT2G32950.1 TraesCS2D01G304900.2 AT5G63860.1 19165148
AT2G32950.1 TraesCS6A01G153100.1 AT5G63860.1 19165148
AT2G32950.1 TraesCS6B01G180900.1 AT5G63860.1 19165148
AT2G32950.1 TraesCS6D01G142500.1 AT5G63860.1 19165148
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G305800.1 Wheat nucleus 98.29 98.43
TraesCS6B01G356400.1 Wheat nucleus 96.71 97.69
Os02t0771100-01 Rice nucleus 85.86 87.74
KXG31183 Sorghum nucleus, plastid 85.43 86.04
Zm00001d018207_P001 Maize nucleus 85.14 86.0
Zm00001d052138_P004 Maize nucleus 83.71 85.42
Bra021818.1-P Field mustard cytosol 13.0 76.47
VIT_10s0523g00030.t01 Wine grape nucleus 65.29 75.91
GSMUA_Achr3P20130_001 Banana nucleus 72.14 74.7
CDY19171 Canola cytosol 26.57 73.81
GSMUA_AchrUn_... Banana nucleus 66.43 72.77
AT2G32950.1 Thale cress nucleus 67.43 69.93
CDY52540 Canola nucleus 67.14 69.42
CDY12145 Canola nucleus 67.0 69.38
Solyc12g005950.1.1 Tomato nucleus 67.0 69.28
Bra005541.1-P Field mustard nucleus 66.14 69.21
KRH73341 Soybean nucleus 66.0 69.06
KRH14801 Soybean nucleus 66.29 68.74
PGSC0003DMT400036075 Potato nucleus 63.71 68.3
VIT_12s0059g01420.t01 Wine grape nucleus 65.14 67.46
Solyc11g011980.1.1 Tomato nucleus 64.43 67.11
PGSC0003DMT400034706 Potato nucleus 64.86 65.89
CDX79494 Canola cytosol 8.86 60.19
TraesCS3A01G284700.2 Wheat cytosol 31.71 28.65
TraesCS6A01G039200.1 Wheat plastid 13.14 22.55
Protein Annotations
MapMan:18.4.16MapMan:19.2.2.8.3.4.1Gene3D:2.130.10.10MapMan:26.1.1.3.3.1Gene3D:3.30.40.10ncoils:Coil
GO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0006139
GO:GO:0006259GO:GO:0006281GO:GO:0006464GO:GO:0006950GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009605GO:GO:0009628GO:GO:0009640GO:GO:0009641GO:GO:0009649
GO:GO:0009791GO:GO:0009987GO:GO:0010119GO:GO:0016604GO:GO:0016740GO:GO:0019538
GO:GO:0042802GO:GO:0046283GO:GO:0048573GO:GO:0061630InterPro:IPR001680InterPro:IPR001841
InterPro:IPR013083InterPro:IPR015943InterPro:IPR017986PFAM:PF00400PFAM:PF13923ScanProsite:PS00518
ScanProsite:PS00678PFscan:PS50082PFscan:PS50089PFscan:PS50294PANTHER:PTHR44080PANTHER:PTHR44080:SF2
SMART:SM00184SMART:SM00320SUPFAM:SSF50978SUPFAM:SSF57850EnsemblPlantsGene:TraesCS6A01G326100EnsemblPlants:TraesCS6A01G326100.1
InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfInterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDInterPro:Znf_RING_CSTIGR:cd16504SEG:seg::
Description
No Description!
Coordinates
chr6A:+:559421622..559427356
Molecular Weight (calculated)
77726.6 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.456
Length
700 amino acids
Sequence
(BLAST)
001: MGDSSVAPAG ALVPSVPKPE HAPSAGDPAA QLQALAAAAA DDECAGAGAS PSSSPGEGDG AGAAEGADAA GDRDLLCPIC MALIKDAFLT ACGHSFCYMC
101: IVTHLNHKSD CPCCANYLTK AQLYPNFLLD KVVKKMSARQ VAKTASPIDQ FRHVVQQGND MSVKELDSLM TLIAEKKRQM EQQESETNMQ ILLVFLHCLR
201: KQKLEELNEI QTDLQYIKDD ISSVERHRLD LHRTKERYSM RLRMLLDEPA ASKMWPSPME KPSSPFVPNS RAPPSTSSPG GLNNRRFDLR APASHQGHQR
301: RDALASSDPP NPPIQSSNVI ARKRRVQAQF NELQEYYLQR RRTGAQSHRQ EDVVTMNREG YHEGLEDFQS VLTTFTRYSR LRVIAELRHG DLFHSANIVS
401: SIEFDRDDEL FATAGVSKRI KVFEFSTVVN EPSDVHCPVV EMATRSKLSC LSWNKYSKNV IASSDYEGIV TVWDVQTRQS VMEYEEHEKR AWSVDFSRTE
501: PKMLVSGSDD CKVKVWCTNQ EASAINIDMK ANICSVKYNP GSSYYVAVGS ADHHIHYFDL RNPSAPLHVF GGHKKAVSYV KFLSNNELAS ASTDSTLRLW
601: DVKDNCPLRT FRGHKNEKNF VGLSVNNEYI ACGSETNEVF VYHKAISKPA SSHRFLSTDP DDAEDDPGSY FISAVCWKSD SPTMLTANSQ GTIKVLVLAP
Best Arabidopsis Sequence Match ( AT2G32950.1 )
(BLAST)
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.