Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G305800.1 | Wheat | nucleus | 98.29 | 98.43 |
TraesCS6B01G356400.1 | Wheat | nucleus | 96.71 | 97.69 |
Os02t0771100-01 | Rice | nucleus | 85.86 | 87.74 |
KXG31183 | Sorghum | nucleus, plastid | 85.43 | 86.04 |
Zm00001d018207_P001 | Maize | nucleus | 85.14 | 86.0 |
Zm00001d052138_P004 | Maize | nucleus | 83.71 | 85.42 |
Bra021818.1-P | Field mustard | cytosol | 13.0 | 76.47 |
VIT_10s0523g00030.t01 | Wine grape | nucleus | 65.29 | 75.91 |
GSMUA_Achr3P20130_001 | Banana | nucleus | 72.14 | 74.7 |
CDY19171 | Canola | cytosol | 26.57 | 73.81 |
GSMUA_AchrUn_... | Banana | nucleus | 66.43 | 72.77 |
AT2G32950.1 | Thale cress | nucleus | 67.43 | 69.93 |
CDY52540 | Canola | nucleus | 67.14 | 69.42 |
CDY12145 | Canola | nucleus | 67.0 | 69.38 |
Solyc12g005950.1.1 | Tomato | nucleus | 67.0 | 69.28 |
Bra005541.1-P | Field mustard | nucleus | 66.14 | 69.21 |
KRH73341 | Soybean | nucleus | 66.0 | 69.06 |
KRH14801 | Soybean | nucleus | 66.29 | 68.74 |
PGSC0003DMT400036075 | Potato | nucleus | 63.71 | 68.3 |
VIT_12s0059g01420.t01 | Wine grape | nucleus | 65.14 | 67.46 |
Solyc11g011980.1.1 | Tomato | nucleus | 64.43 | 67.11 |
PGSC0003DMT400034706 | Potato | nucleus | 64.86 | 65.89 |
CDX79494 | Canola | cytosol | 8.86 | 60.19 |
TraesCS3A01G284700.2 | Wheat | cytosol | 31.71 | 28.65 |
TraesCS6A01G039200.1 | Wheat | plastid | 13.14 | 22.55 |
Protein Annotations
Description
No Description!
Coordinates
chr6A:+:559421622..559427356
Molecular Weight (calculated)
77726.6 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.456
Length
700 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSVAPAG ALVPSVPKPE HAPSAGDPAA QLQALAAAAA DDECAGAGAS PSSSPGEGDG AGAAEGADAA GDRDLLCPIC MALIKDAFLT ACGHSFCYMC
101: IVTHLNHKSD CPCCANYLTK AQLYPNFLLD KVVKKMSARQ VAKTASPIDQ FRHVVQQGND MSVKELDSLM TLIAEKKRQM EQQESETNMQ ILLVFLHCLR
201: KQKLEELNEI QTDLQYIKDD ISSVERHRLD LHRTKERYSM RLRMLLDEPA ASKMWPSPME KPSSPFVPNS RAPPSTSSPG GLNNRRFDLR APASHQGHQR
301: RDALASSDPP NPPIQSSNVI ARKRRVQAQF NELQEYYLQR RRTGAQSHRQ EDVVTMNREG YHEGLEDFQS VLTTFTRYSR LRVIAELRHG DLFHSANIVS
401: SIEFDRDDEL FATAGVSKRI KVFEFSTVVN EPSDVHCPVV EMATRSKLSC LSWNKYSKNV IASSDYEGIV TVWDVQTRQS VMEYEEHEKR AWSVDFSRTE
501: PKMLVSGSDD CKVKVWCTNQ EASAINIDMK ANICSVKYNP GSSYYVAVGS ADHHIHYFDL RNPSAPLHVF GGHKKAVSYV KFLSNNELAS ASTDSTLRLW
601: DVKDNCPLRT FRGHKNEKNF VGLSVNNEYI ACGSETNEVF VYHKAISKPA SSHRFLSTDP DDAEDDPGSY FISAVCWKSD SPTMLTANSQ GTIKVLVLAP
101: IVTHLNHKSD CPCCANYLTK AQLYPNFLLD KVVKKMSARQ VAKTASPIDQ FRHVVQQGND MSVKELDSLM TLIAEKKRQM EQQESETNMQ ILLVFLHCLR
201: KQKLEELNEI QTDLQYIKDD ISSVERHRLD LHRTKERYSM RLRMLLDEPA ASKMWPSPME KPSSPFVPNS RAPPSTSSPG GLNNRRFDLR APASHQGHQR
301: RDALASSDPP NPPIQSSNVI ARKRRVQAQF NELQEYYLQR RRTGAQSHRQ EDVVTMNREG YHEGLEDFQS VLTTFTRYSR LRVIAELRHG DLFHSANIVS
401: SIEFDRDDEL FATAGVSKRI KVFEFSTVVN EPSDVHCPVV EMATRSKLSC LSWNKYSKNV IASSDYEGIV TVWDVQTRQS VMEYEEHEKR AWSVDFSRTE
501: PKMLVSGSDD CKVKVWCTNQ EASAINIDMK ANICSVKYNP GSSYYVAVGS ADHHIHYFDL RNPSAPLHVF GGHKKAVSYV KFLSNNELAS ASTDSTLRLW
601: DVKDNCPLRT FRGHKNEKNF VGLSVNNEYI ACGSETNEVF VYHKAISKPA SSHRFLSTDP DDAEDDPGSY FISAVCWKSD SPTMLTANSQ GTIKVLVLAP
001: MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
101: NFLLDKLLKK TSARHVSKTA SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD ELNEVQTDLQ YIKEDINAVE
201: RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301: QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF
401: SSVVNEPADM QCPIVEMSTR SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV SGSDDCKVKV WCTRQEASVI
501: NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601: NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML TANSQGTIKV LVLAA
Arabidopsis Description
COP1FUS1 [Source:UniProtKB/TrEMBL;Acc:A0A178VXE2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.