Factsheet for TraesCS6D01G199200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G195400.4
TraesCS1B01G210300.4
TraesCS1D01G199200.1
TraesCS4A01G321300.1
TraesCS5B01G557500.2
TraesCS5D01G551800.3
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	TraesCS1A01G195400.4	AT1G32230.1	11018516
AT1G06040.1	TraesCS1B01G210300.4	AT1G32230.1	11018516
AT1G06040.1	TraesCS1D01G199200.1	AT1G32230.1	11018516
AT1G06040.1	TraesCS4A01G321300.1	AT1G32230.1	11018516
AT1G06040.1	TraesCS5B01G557500.2	AT1G32230.1	11018516
AT1G06040.1	TraesCS5D01G551800.3	AT1G32230.1	11018516
AT1G06040.1	TraesCS1A01G195400.4	AT1G32230.1	19548978
AT1G06040.1	TraesCS1B01G210300.4	AT1G32230.1	19548978
AT1G06040.1	TraesCS1D01G199200.1	AT1G32230.1	19548978
AT1G06040.1	TraesCS4A01G321300.1	AT1G32230.1	19548978
AT1G06040.1	TraesCS5B01G557500.2	AT1G32230.1	19548978
AT1G06040.1	TraesCS5D01G551800.3	AT1G32230.1	19548978
AT1G06040.1	TraesCS6A01G326100.1	AT2G32950.1	11226162
AT1G06040.1	TraesCS6B01G356400.1	AT2G32950.1	11226162
AT1G06040.1	TraesCS6D01G305800.1	AT2G32950.1	11226162
AT2G31380.1	TraesCS6A01G326100.1	AT2G32950.1	11226162
AT2G31380.1	TraesCS6B01G356400.1	AT2G32950.1	11226162
AT2G31380.1	TraesCS6D01G305800.1	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G216400.1	Wheat	extracellular	96.15	97.66
TraesCS6B01G246500.1	Wheat	extracellular	96.15	96.15
EES07119	Sorghum	nucleus	78.85	77.95
Zm00001d051018_P002	Maize	extracellular	74.23	76.28
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	67.31	67.83
GSMUA_Achr9P02360_001	Banana	cytosol	54.23	59.24
VIT_05s0102g00750.t01	Wine grape	nucleus	53.85	58.58
CDY06194	Canola	nucleus	50.38	55.98
CDY15558	Canola	nucleus	51.54	55.83
KRH23214	Soybean	nucleus	51.15	55.65
Bra030635.1-P	Field mustard	nucleus	51.54	55.6
Bra032441.1-P	Field mustard	nucleus	50.0	55.56
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	54.23	55.51
KRH24617	Soybean	nucleus	50.77	55.46
PGSC0003DMT400069498	Potato	nucleus	49.62	55.36
CDY09992	Canola	nucleus	50.0	55.32
CDX86539	Canola	nucleus	51.15	55.19
Solyc06g073180.2.1	Tomato	nucleus	49.23	54.94
Bra015469.1-P	Field mustard	nucleus	51.15	54.73
KRH29616	Soybean	nucleus	50.0	54.62
AT2G31380.1	Thale cress	nucleus	48.46	52.94
Bra021734.1-P	Field mustard	nucleus	48.46	52.5
AT1G06040.1	Thale cress	nucleus	50.0	52.42
CDY19093	Canola	nucleus	48.08	52.3
CDY15382	Canola	nucleus	48.46	52.07
CDY56613	Canola	nucleus	48.46	51.85
Bra018249.1-P	Field mustard	nucleus	48.08	51.44
CDY10800	Canola	nucleus	47.69	51.03
KRH10122	Soybean	nucleus	50.38	33.42
TraesCS6D01G133100.1	Wheat	nucleus	26.15	31.78
TraesCS6D01G221700.1	Wheat	nucleus	27.31	29.83
TraesCS5D01G323400.1	Wheat	cytosol	22.31	27.49
TraesCS2D01G386300.1	Wheat	nucleus	27.69	27.48
TraesCS7D01G103300.1	Wheat	nucleus	35.38	25.34
TraesCS7D01G379900.1	Wheat	nucleus	27.69	25.26
TraesCS3D01G139600.1	Wheat	nucleus	31.15	23.21

Protein Annotations

EnsemblPlants:TraesCS6D01G199200.1	EnsemblPlantsGene:TraesCS6D01G199200	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31832
PANTHER:PTHR31832:SF30	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336	TIGR:cd00021
MapMan:15.5.1.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:277099869..277100765

Molecular Weight (calculated)

28223.2 Da

IEP (calculated)

5.018

GRAVY (calculated)

-0.282

Length

260 amino acids

Sequence
(BLAST)

001: MKIQCDSCGV AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLDAL GAKLPRCDIC QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT
101: GIRVGLGPVS ACAAGDHGAG HDADHHAPPK VACEPYPPAQ PAARAQQVPS PPQFLPQDWA VDELLQFSDY ESNDKLHKDS PLAFKELEWF TADMELFHDH
201: APKGGRATME VPEFFASQAA DDAAYYRPSR VAATAGLRQS KKARVEIPDD EDFFIVPDLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.