Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G172300.1 | Wheat | nucleus | 96.73 | 96.73 |
| TraesCS6A01G143900.1 | Wheat | nucleus | 95.33 | 95.33 |
| HORVU6Hr1G028150.2 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 95.33 | 94.88 |
| Os12t0209200-01 | Rice | cytosol | 60.75 | 61.9 |
| EES15831 | Sorghum | nucleus | 55.14 | 48.16 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 31.78 | 28.57 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 31.78 | 26.15 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 31.78 | 25.95 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.84 | 25.58 |
| TraesCS5D01G323400.1 | Wheat | cytosol | 24.77 | 25.12 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 41.59 | 24.52 |
| TraesCS3D01G139600.1 | Wheat | nucleus | 38.32 | 23.5 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 27.57 | 20.7 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G133100.1 | EnsemblPlantsGene:TraesCS6D01G133100 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | PANTHER:PTHR31832 |
| PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.1 |
Description
No Description!
Coordinates
chr6D:-:100872122..100874313
Molecular Weight (calculated)
22055.4 Da
IEP (calculated)
4.833
GRAVY (calculated)
-0.278
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMKIGCDAC GQAEATVLCC ADEAALCRRC DAAVHSANKL AGRHHRVALL SSAPAGSSSP GAGDDGGTHP ACDICQEKTG HFFCVEDRAL LCRSCDVAIH
101: TATPHASTHH RFLITGVRVG VDQDHIGDVS GATVGSPSNS SANGSNSMPT SENFAIANGQ RSEEGAGLIG GGEDDIGQQQ QWPWSDIFAD DGVGMDQHQC
201: YPGFSEPGSS SLTG
101: TATPHASTHH RFLITGVRVG VDQDHIGDVS GATVGSPSNS SANGSNSMPT SENFAIANGQ RSEEGAGLIG GGEDDIGQQQ QWPWSDIFAD DGVGMDQHQC
201: YPGFSEPGSS SLTG
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.