Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G317700.1 | Wheat | cytosol | 98.1 | 98.1 |
| TraesCS5A01G317100.1 | Wheat | cytosol | 98.1 | 98.1 |
| Solyc02g084420.2.1 | Tomato | cytosol | 34.6 | 82.95 |
| Os09t0527900-01 | Rice | cytosol | 81.52 | 81.52 |
| Zm00001d021278_P001 | Maize | cytosol | 78.2 | 80.1 |
| EER97079 | Sorghum | cytosol | 80.09 | 80.09 |
| HORVU5Hr1G081190.1 | Barley | cytosol, nucleus, plastid | 96.21 | 73.82 |
| GSMUA_Achr10P... | Banana | cytosol | 65.88 | 66.83 |
| VIT_04s0023g03030.t01 | Wine grape | cytosol | 57.35 | 65.76 |
| PGSC0003DMT400009328 | Potato | cytosol | 55.45 | 64.29 |
| CDX82018 | Canola | cytosol | 54.03 | 60.96 |
| VIT_03s0038g00690.t01 | Wine grape | cytosol | 60.19 | 60.48 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 49.29 | 60.47 |
| Bra031180.1-P | Field mustard | cytosol | 53.55 | 60.11 |
| Bra010718.1-P | Field mustard | cytosol | 50.24 | 58.89 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.55 | 58.55 |
| CDX90301 | Canola | cytosol | 49.29 | 57.78 |
| CDY12111 | Canola | cytosol | 49.29 | 57.78 |
| CDX72726 | Canola | cytosol | 48.82 | 57.54 |
| KRH24373 | Soybean | nucleus | 57.35 | 57.08 |
| KRH29344 | Soybean | nucleus | 57.35 | 57.08 |
| Bra033588.1-P | Field mustard | cytosol | 48.82 | 56.59 |
| PGSC0003DMT400008044 | Potato | cytosol | 55.92 | 55.66 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.55 | 53.81 |
| GSMUA_Achr1P07770_001 | Banana | cytosol | 61.61 | 53.72 |
| Zm00001d006198_P001 | Maize | cytosol | 63.51 | 52.76 |
| CDY22402 | Canola | plastid | 38.86 | 50.93 |
| Solyc01g110370.2.1 | Tomato | cytosol | 54.98 | 48.13 |
| AT4G38960.3 | Thale cress | cytosol | 50.71 | 47.35 |
| TraesCS6D01G133100.1 | Wheat | nucleus | 25.12 | 24.77 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 25.59 | 22.69 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 27.49 | 22.48 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 27.49 | 22.31 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 26.54 | 21.37 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 23.7 | 17.54 |
| TraesCS3D01G139600.1 | Wheat | nucleus | 28.44 | 17.19 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 27.49 | 15.98 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G323400.1 | EnsemblPlantsGene:TraesCS5D01G323400 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box | ncoils:Coil |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF5 | PFAM:PF00643 | PFscan:PS50119 | SMART:SM00336 | TIGR:cd00021 |
| MapMan:15.5.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:415613363..415617613
Molecular Weight (calculated)
23085.9 Da
IEP (calculated)
6.302
GRAVY (calculated)
-0.611
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLIRCDICE SSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR
101: VEFPGDKPGH MDDVAMQQMD SENPRDQNNA HSVPKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS SQTHGVDHSH NNNHDSSGVV
201: PTCNYDGAAD K
101: VEFPGDKPGH MDDVAMQQMD SENPRDQNNA HSVPKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS SQTHGVDHSH NNNHDSSGVV
201: PTCNYDGAAD K
001: MRILCDACEN AAAIIFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLAEP SNAPCCDICE NAPAFFYCEI DGSSLCLQCD MVVHVGGKRT HGRFLLLRQR
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
101: IEFPGDKPKE NNTRDNLQNQ RVSTNGNGEA NGKIDDEMID LNANPQRVHE PSSNNNGIDV NNENNHEPAG LVPVGPFKRE SEK
Arabidopsis Description
B-box type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:F4JUJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.