Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G108400.1 | Wheat | nucleus | 97.8 | 98.89 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 19.56 | 98.61 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 91.46 | 98.22 |
| HORVU7Hr1G023100.2 | Barley | plastid | 93.39 | 84.33 |
| Os06t0152200-01 | Rice | nucleus | 75.21 | 75.83 |
| KXG19323 | Sorghum | nucleus | 74.1 | 71.73 |
| Zm00001d036214_P001 | Maize | nucleus | 71.35 | 67.1 |
| Zm00001d045323_P004 | Maize | nucleus | 73.55 | 63.27 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 46.83 | 56.67 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 46.28 | 55.63 |
| Solyc07g062160.2.1 | Tomato | nucleus | 40.77 | 49.66 |
| PGSC0003DMT400018196 | Potato | nucleus | 40.22 | 48.99 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 39.39 | 48.81 |
| KRH21881 | Soybean | nucleus | 38.57 | 47.78 |
| KRH37922 | Soybean | nucleus | 38.02 | 47.26 |
| Bra035051.1-P | Field mustard | nucleus | 36.64 | 45.55 |
| CDX87448 | Canola | nucleus | 36.64 | 45.55 |
| CDX88458 | Canola | nucleus | 36.91 | 45.42 |
| Bra003640.1-P | Field mustard | nucleus | 35.81 | 45.14 |
| CDY69214 | Canola | nucleus | 35.81 | 45.14 |
| CDY11657 | Canola | nucleus | 36.64 | 45.08 |
| CDX79268 | Canola | nucleus | 35.54 | 44.79 |
| CDY14607 | Canola | nucleus | 35.26 | 43.99 |
| Bra008371.1-P | Field mustard | nucleus | 35.26 | 43.99 |
| PGSC0003DMT400048964 | Potato | nucleus | 36.09 | 43.81 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 33.33 | 42.91 |
| CDY26870 | Canola | nucleus | 35.26 | 42.67 |
| AT1G78600.2 | Thale cress | nucleus | 36.64 | 41.69 |
| TraesCS6D01G133100.1 | Wheat | nucleus | 24.52 | 41.59 |
| TraesCS3D01G139600.1 | Wheat | nucleus | 39.39 | 40.97 |
| KRH27404 | Soybean | extracellular, vacuole | 38.57 | 37.43 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 25.34 | 35.38 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 22.86 | 34.87 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 24.24 | 34.11 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 22.86 | 31.68 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 23.14 | 29.47 |
| TraesCS5D01G323400.1 | Wheat | cytosol | 15.98 | 27.49 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009641 | GO:GO:0009658 |
| GO:GO:0009718 | GO:GO:0009987 | GO:GO:0015995 | GO:GO:0016043 | GO:GO:0016607 | GO:GO:0043565 |
| InterPro:IPR000315 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF32 | SMART:SM00336 |
| EnsemblPlantsGene:TraesCS7D01G103300 | EnsemblPlants:TraesCS7D01G103300.1 | InterPro:Znf_B-box | TIGR:cd00021 | SEG:seg | : |
Description
No Description!
Coordinates
chr7D:+:63325687..63331344
Molecular Weight (calculated)
38774.1 Da
IEP (calculated)
4.845
GRAVY (calculated)
-0.358
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNACGA AEARVLCCAD EAALCAACDE EVHAANRLAA KHQRVPLLPD AAPDAAAPPK CDICQEASGY FFCLEDRALL CRDCDVAIHT VNSFVSAHQR
101: FLLTGVQVGL DPADPVPPVA DKHVNTSGGS VDSLPKHLPK KNPTVLFSGE NSASIPSQNA ISGDYSRQIS APNTKTGMTN WTMDNSALRL AEPPPKYLSD
201: GNSKLLLSNQ TTTALSNQMN RDSGRAYNLP FSGGNGSDSL PDWPVDEFFS NLEYGPNFGF TEHGSSKGDN AKLGSAGGSP QCRLAEGLFA EDLLGQVPGF
301: DAEDPWVVPE VPSPPTASGL CWQGNLHYPV YDSAMFVPEA PSLQSSQDHF TASAGFKRRR REF
101: FLLTGVQVGL DPADPVPPVA DKHVNTSGGS VDSLPKHLPK KNPTVLFSGE NSASIPSQNA ISGDYSRQIS APNTKTGMTN WTMDNSALRL AEPPPKYLSD
201: GNSKLLLSNQ TTTALSNQMN RDSGRAYNLP FSGGNGSDSL PDWPVDEFFS NLEYGPNFGF TEHGSSKGDN AKLGSAGGSP QCRLAEGLFA EDLLGQVPGF
301: DAEDPWVVPE VPSPPTASGL CWQGNLHYPV YDSAMFVPEA PSLQSSQDHF TASAGFKRRR REF
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.