Factsheet for Solyc12g005420.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048964	Potato	nucleus	91.13	85.95
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	17.73	69.44
Solyc07g062160.2.1	Tomato	nucleus	64.54	61.07
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	59.22	57.0
KRH21881	Soybean	nucleus	55.32	53.24
Bra035051.1-P	Field mustard	nucleus	50.0	48.29
CDX87448	Canola	nucleus	50.0	48.29
Bra008371.1-P	Field mustard	nucleus	49.29	47.77
CDX79268	Canola	nucleus	48.58	47.57
CDX88458	Canola	nucleus	49.29	47.12
CDY11657	Canola	nucleus	49.29	47.12
CDY14607	Canola	nucleus	48.58	47.08
Bra003640.1-P	Field mustard	nucleus	47.52	46.53
GSMUA_Achr6P21590_001	Banana	nucleus	49.29	46.33
CDY26870	Canola	nucleus	49.29	46.33
CDY69214	Canola	nucleus	47.16	46.18
Solyc02g084420.2.1	Tomato	cytosol	14.18	45.45
AT1G78600.2	Thale cress	nucleus	50.0	44.2
GSMUA_Achr6P14750_001	Banana	nucleus	45.74	42.72
KRH27404	Soybean	extracellular, vacuole	55.32	41.71
TraesCS7B01G006400.1	Wheat	nucleus	42.2	35.21
Solyc06g073180.2.1	Tomato	nucleus	29.08	35.19
Os06t0152200-01	Rice	nucleus	43.97	34.44
TraesCS7A01G108400.1	Wheat	nucleus	42.91	33.7
TraesCS7D01G103300.1	Wheat	nucleus	42.91	33.33
KXG19323	Sorghum	nucleus	43.62	32.8
Solyc01g110180.2.1	Tomato	nucleus	23.4	32.51
Zm00001d036214_P001	Maize	nucleus	42.55	31.09
Zm00001d045323_P004	Maize	nucleus	43.97	29.38
HORVU7Hr1G023100.2	Barley	plastid	41.13	28.86
Solyc04g081020.2.1	Tomato	nucleus	29.79	28.09
Solyc12g089240.1.1	Tomato	nucleus	30.5	26.14
Solyc01g110370.2.1	Tomato	cytosol	19.15	22.41

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	InterPro:IPR000315	UniProt:K4DB80	PFAM:PF00643	PFscan:PS50119
PANTHER:PTHR31832	PANTHER:PTHR31832:SF31	SMART:SM00336	EnsemblPlantsGene:Solyc12g005420.1	EnsemblPlants:Solyc12g005420.1.1	UniParc:UPI000276A2FA
InterPro:Znf_B-box	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:251564..253391

Molecular Weight (calculated)

30634.1 Da

IEP (calculated)

6.227

GRAVY (calculated)

-0.326

Length

282 amino acids

Sequence
(BLAST)

001: MKIQCNACEV AEAKVLCCAD EAALCWYCDD KVHAANKLAN KHQRVALSAS SSPMPKCDIC QETVGFFFCL EDRALLCRKC DISIHTVNAY VSSHQRFLLT
101: GVKVGLEPLG PCASASSRKS HEQRSPPILK ITPPSEGVLP VHTSGNGNFA PSRLPIVGNI PQCQFDQYLG MPDFNQNYGY MDYGQSKAGN GKVGESASSP
201: FLRDVDAEVA GDECFSTEVP DTCWAVPQIP SSPTASGLNW PTKSIQNPFD AALLESDASY FPLQNIQDQQ SNGSGTKRSR RF

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.