Factsheet for TraesCS7B01G006400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G108400.1	Wheat	nucleus	98.52	92.76
HORVU7Hr1G023060.1	Barley	cytosol, mitochondrion, nucleus	19.53	91.67
TraesCS7D01G103300.1	Wheat	nucleus	98.22	91.46
HORVU7Hr1G023100.2	Barley	plastid	92.6	77.86
Os06t0152200-01	Rice	nucleus	76.63	71.94
KXG19323	Sorghum	nucleus	75.74	68.27
Zm00001d036214_P001	Maize	nucleus	72.49	63.47
Zm00001d045323_P004	Maize	nucleus	74.56	59.72
GSMUA_Achr6P21590_001	Banana	nucleus	48.22	54.33
GSMUA_Achr6P14750_001	Banana	nucleus	47.04	52.65
Solyc07g062160.2.1	Tomato	nucleus	42.9	48.66
PGSC0003DMT400018196	Potato	nucleus	42.31	47.99
VIT_19s0014g00350.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	41.12	47.44
KRH21881	Soybean	nucleus	40.53	46.76
KRH37922	Soybean	nucleus	39.65	45.89
CDY69214	Canola	nucleus	38.46	45.14
Bra003640.1-P	Field mustard	nucleus	38.46	45.14
CDX88458	Canola	nucleus	39.35	45.08
Bra035051.1-P	Field mustard	nucleus	38.76	44.86
CDX87448	Canola	nucleus	38.76	44.86
CDX79268	Canola	nucleus	38.17	44.79
CDY11657	Canola	nucleus	39.05	44.75
CDY14607	Canola	nucleus	37.28	43.3
Bra008371.1-P	Field mustard	nucleus	37.28	43.3
PGSC0003DMT400048964	Potato	nucleus	38.17	43.14
Solyc12g005420.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	35.21	42.2
CDY26870	Canola	nucleus	37.28	42.0
AT1G78600.2	Thale cress	nucleus	38.76	41.07
TraesCS3B01G156900.1	Wheat	nucleus	41.72	40.4
TraesCS6B01G172300.1	Wheat	nucleus	25.15	39.72
KRH27404	Soybean	extracellular, vacuole	40.53	36.63
TraesCS6B01G285200.1	Wheat	nucleus	24.56	34.87
TraesCS6B01G246500.1	Wheat	extracellular	26.63	34.62
TraesCS2B01G367300.2	Wheat	nucleus	25.44	33.33
TraesCS2B01G406600.2	Wheat	nucleus	24.85	31.7
TraesCS7B01G286300.1	Wheat	nucleus	24.85	27.01
TraesCS5B01G317700.1	Wheat	cytosol	16.27	26.07

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009641	GO:GO:0009658
GO:GO:0009718	GO:GO:0009987	GO:GO:0015995	GO:GO:0016043	GO:GO:0016607	GO:GO:0043565
InterPro:IPR000315	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF32	SMART:SM00336
EnsemblPlantsGene:TraesCS7B01G006400	EnsemblPlants:TraesCS7B01G006400.1	InterPro:Znf_B-box	TIGR:cd00021	SEG:seg	:

Description

No Description!

Coordinates

chr7B:+:3684377..3689061

Molecular Weight (calculated)

36161.1 Da

IEP (calculated)

4.599

GRAVY (calculated)

-0.348

Length

338 amino acids

Sequence
(BLAST)

001: MKIQCNACGA AEARVLCCAD EAALCAACDE EVHAANRLAG KHQRVPLLPD AAAPPKCDIC QEASGYFFCL EDRALLCRDC DVAIHTVNSF VSAHQRFLLT
101: GVQVGLDPAD PVPPVADKHV NTSGENSASI PSQNAISGDY SRQISVPNTK TGMTNWTMDN SALRLAEPPP KYLSDGNSKL LLSNQTTTAL SNQMNRDSGR
201: AYNLPFSGGN GSDSLPEWPV DEFFSNLEYG PNFGFTEHGS SKGDNAKLGS AGGSPQCRLA EGLFAEDLLG QVPGFDAEDP WVVPEVPSPP TASGLCWQGN
301: LHYPVYDGAM FVPEAPSLQS SQDNFAASAG FKRRRREF

Best Arabidopsis Sequence Match ( AT1G78600.1 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.