Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14607 | Canola | nucleus | 98.28 | 98.28 |
| CDY26870 | Canola | nucleus | 99.66 | 96.67 |
| Bra035051.1-P | Field mustard | nucleus | 89.0 | 88.7 |
| Bra003640.1-P | Field mustard | nucleus | 85.22 | 86.11 |
| AT1G78600.2 | Thale cress | nucleus | 87.29 | 79.62 |
| HORVU7Hr1G023060.1 | Barley | cytosol, mitochondrion, nucleus | 18.21 | 73.61 |
| Solyc07g062160.2.1 | Tomato | nucleus | 56.7 | 55.37 |
| PGSC0003DMT400018196 | Potato | nucleus | 56.36 | 55.03 |
| VIT_19s0014g00350.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.98 | 54.61 |
| KRH21881 | Soybean | nucleus | 54.64 | 54.27 |
| Solyc12g005420.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 47.77 | 49.29 |
| PGSC0003DMT400048964 | Potato | nucleus | 50.17 | 48.83 |
| GSMUA_Achr6P21590_001 | Banana | nucleus | 47.42 | 46.0 |
| GSMUA_Achr6P14750_001 | Banana | nucleus | 47.08 | 45.36 |
| KRH27404 | Soybean | extracellular, vacuole | 53.95 | 41.98 |
| TraesCS7B01G006400.1 | Wheat | nucleus | 43.3 | 37.28 |
| TraesCS7A01G108400.1 | Wheat | nucleus | 43.99 | 35.65 |
| Os06t0152200-01 | Rice | nucleus | 43.64 | 35.28 |
| TraesCS7D01G103300.1 | Wheat | nucleus | 43.99 | 35.26 |
| Bra032441.1-P | Field mustard | nucleus | 28.18 | 35.04 |
| Bra015469.1-P | Field mustard | nucleus | 29.21 | 34.98 |
| Bra030635.1-P | Field mustard | nucleus | 28.87 | 34.85 |
| Bra021734.1-P | Field mustard | nucleus | 28.52 | 34.58 |
| KXG19323 | Sorghum | nucleus | 44.33 | 34.4 |
| Bra018249.1-P | Field mustard | nucleus | 28.18 | 33.74 |
| Zm00001d036214_P001 | Maize | nucleus | 43.64 | 32.9 |
| Bra033588.1-P | Field mustard | cytosol | 20.27 | 32.42 |
| Bra031180.1-P | Field mustard | cytosol | 20.62 | 31.91 |
| Bra010718.1-P | Field mustard | cytosol | 19.59 | 31.67 |
| Zm00001d045323_P004 | Maize | nucleus | 44.67 | 30.81 |
| HORVU7Hr1G023100.2 | Barley | plastid | 42.27 | 30.6 |
| Bra011879.1-P | Field mustard | nucleus | 23.71 | 28.87 |
| Bra010713.1-P | Field mustard | nucleus | 23.71 | 28.63 |
| Bra008204.1-P | Field mustard | nucleus | 29.55 | 28.48 |
| Bra015835.1-P | Field mustard | nucleus | 30.58 | 27.73 |
| Bra003748.1-P | Field mustard | nucleus | 29.55 | 26.96 |
Protein Annotations
| EnsemblPlants:Bra008371.1 | EnsemblPlants:Bra008371.1-P | EnsemblPlantsGene:Bra008371 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF31 | PFAM:PF00643 | PFscan:PS50119 | SEG:seg | SMART:SM00336 |
| UniParc:UPI00025466AF | UniProt:M4CVX4 | MapMan:15.5.1.1 | : | : | : |
Description
AT1G78600 (E=2e-121) LZF1, STH3 | LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1); transcription factor/ zinc ion binding
Coordinates
chrA02:+:15145457..15146731
Molecular Weight (calculated)
31815.9 Da
IEP (calculated)
5.946
GRAVY (calculated)
-0.564
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCNVCEA AEAAVLCCAD EAALCWACDE KIHAANKLAE KHQRVPLSVS SSSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIRVGLEAID TGPSTKSSSP ASNDDKAMET KQFTLTTSEP QKMDFDHHQV GLPETKVSDH VSTKLPIASS GSATGQWQLE EIFGLTDFDQ SYEYMENNGS
201: SSKADTSRRG DSDSSSVMRS GEEDGEDNNN CLGGETSWAV PQIHSPPTAS GLNWPKHFDH QSVFVPDISS STPYTGSSPN QRVGKRRRRR F
101: GIRVGLEAID TGPSTKSSSP ASNDDKAMET KQFTLTTSEP QKMDFDHHQV GLPETKVSDH VSTKLPIASS GSATGQWQLE EIFGLTDFDQ SYEYMENNGS
201: SSKADTSRRG DSDSSSVMRS GEEDGEDNNN CLGGETSWAV PQIHSPPTAS GLNWPKHFDH QSVFVPDISS STPYTGSSPN QRVGKRRRRR F
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
Arabidopsis Description
LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.