Factsheet for Bra015835.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47514	Canola	nucleus	100.0	100.0
CDX73178	Canola	nucleus	96.57	96.27
Bra003748.1-P	Field mustard	nucleus	84.11	84.64
Bra008204.1-P	Field mustard	nucleus	79.44	84.44
KRH17384	Soybean	nucleus	46.73	54.35
VIT_18s0001g13520.t01	Wine grape	nucleus	50.78	53.8
KRH51757	Soybean	nucleus	39.88	52.24
Zm00001d017412_P001	Maize	nucleus	22.74	51.41
GSMUA_Achr4P05180_001	Banana	cytosol	32.09	50.74
GSMUA_Achr9P20930_001	Banana	cytosol	29.28	50.54
PGSC0003DMT400009514	Potato	nucleus	46.73	50.34
Solyc04g081020.2.1	Tomato	nucleus	46.73	50.17
KRH61078	Soybean	nucleus	40.5	48.87
GSMUA_Achr11P...	Banana	nucleus	27.73	48.11
GSMUA_Achr11P...	Banana	cytosol	29.28	47.47
Bra011879.1-P	Field mustard	nucleus	34.27	46.03
KRH05902	Soybean	nucleus	46.73	45.87
Bra010713.1-P	Field mustard	nucleus	33.96	45.23
PGSC0003DMT400075652	Potato	nucleus	46.42	45.15
Solyc12g089240.1.1	Tomato	nucleus	46.11	44.98
TraesCS6A01G239300.1	Wheat	nucleus	32.4	44.07
TraesCS6B01G285200.1	Wheat	nucleus	32.4	43.7
TraesCS6D01G221700.1	Wheat	nucleus	32.09	43.28
GSMUA_AchrUn_...	Banana	nucleus	36.45	42.09
Os04t0540200-01	Rice	nucleus	32.71	42.0
GSMUA_Achr11P...	Banana	nucleus	34.27	41.98
Zm00001d025957_P001	Maize	nucleus	32.71	41.02
Os02t0646200-01	Rice	nucleus	34.27	40.89
TraesCS2A01G388500.1	Wheat	nucleus	32.71	40.7
Zm00001d002806_P001	Maize	nucleus	32.4	40.31
TraesCS2D01G386300.1	Wheat	nucleus	32.4	39.69
OQU82040	Sorghum	nucleus	32.71	39.62
Zm00001d051309_P001	Maize	nucleus	33.96	39.35
EES07539	Sorghum	nucleus	35.51	38.64
TraesCS2B01G406600.2	Wheat	nucleus	31.78	38.49
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	31.78	35.79
HORVU7Hr1G091180.1	Barley	nucleus	30.53	35.64
TraesCS7D01G379900.1	Wheat	nucleus	30.84	34.74
Bra032441.1-P	Field mustard	nucleus	25.23	34.62
Bra030635.1-P	Field mustard	nucleus	25.55	34.02
Os06t0713000-01	Rice	nucleus	32.09	33.44
Bra015469.1-P	Field mustard	nucleus	25.23	33.33
Zm00001d036418_P001	Maize	nucleus	27.41	32.71
TraesCS7B01G286300.1	Wheat	nucleus	31.46	32.48
TraesCS7A01G383400.3	Wheat	nucleus	31.15	31.95
Bra021734.1-P	Field mustard	nucleus	23.68	31.67
Bra010718.1-P	Field mustard	cytosol	17.45	31.11
Bra035051.1-P	Field mustard	nucleus	28.04	30.82
Bra008371.1-P	Field mustard	nucleus	27.73	30.58
EER90373	Sorghum	cytosol	28.97	30.49
Bra018249.1-P	Field mustard	nucleus	23.05	30.45
Bra003640.1-P	Field mustard	nucleus	27.1	30.21
Bra031180.1-P	Field mustard	cytosol	17.45	29.79
Bra033588.1-P	Field mustard	cytosol	16.82	29.67
GSMUA_Achr1P07740_001	Banana	nucleus	35.51	29.08
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	33.64	28.2
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.22	27.32

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EnsemblPlantsGene:Bra015835	EnsemblPlants:Bra015835.1	EnsemblPlants:Bra015835.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	GO:GO:0046872
InterPro:IPR000315	UniProt:M4DH58	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF6
SMART:SM00336	UniParc:UPI0002541F81	InterPro:Znf_B-box	SEG:seg	:	:

Description

AT1G75540 (E=2e-131) STH2 | STH2 (SALT TOLERANCE HOMOLOG2); transcription factor/ zinc ion binding

Coordinates

chrA07:+:20616909..20618170

Molecular Weight (calculated)

35798.7 Da

IEP (calculated)

7.013

GRAVY (calculated)

-0.700

Length

321 amino acids

Sequence
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCDGCDH RVHHANKLAS KHLRFSLLYP SSSKNSSPIC DICQEKKALL FCQQDRAILC KDCDSSIHSA NEHTKKHDRF
101: LLTGVKLSPT SSVYKPTTES PSSSQDCSVP SPLKKPISAP QSQIKNSKIQ PSKISSDVGM NQWGSTSTIS EYLIDTLPGW HVEDFLDSSL PPFGFSKSGD
201: DDGVLPFMEA EDDSTKRNNN NTVSLPSKNM GIWVPQIPQT LPSSYTNQYF PHDNNNIQFG MYNNKETSHG VDTYAPIQNM KQQGQNKRWY DDGGFTVPQM
301: TTTTTSTFTP LASNKRSRSF W

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.