Factsheet for Os04t0540200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0771100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	Os02t0771100-01	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025957_P001	Maize	nucleus	73.6	71.88
Zm00001d002806_P001	Maize	nucleus	72.4	70.16
TraesCS2A01G388500.1	Wheat	nucleus	72.4	70.16
TraesCS2D01G386300.1	Wheat	nucleus	73.2	69.85
OQU82040	Sorghum	nucleus	73.6	69.43
TraesCS2B01G406600.2	Wheat	nucleus	72.8	68.68
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	69.6	61.05
Os02t0646200-01	Rice	nucleus	64.0	59.48
Solyc01g110180.2.1	Tomato	nucleus	38.0	46.8
CDY41957	Canola	nucleus	36.0	42.45
KRH51757	Soybean	nucleus	39.6	40.41
CDY42602	Canola	nucleus	37.6	40.17
Bra011879.1-P	Field mustard	nucleus	37.6	39.33
PGSC0003DMT400079507	Potato	nucleus	38.8	38.49
CDY12117	Canola	nucleus	37.2	38.43
CDX90306	Canola	nucleus	36.8	38.17
Bra010713.1-P	Field mustard	nucleus	36.8	38.17
AT4G39070.1	Thale cress	cytosol	36.8	38.02
KRH51476	Soybean	nucleus	34.8	37.34
KRH61078	Soybean	nucleus	38.8	36.47
KRH17384	Soybean	nucleus	40.0	36.23
Solyc04g081020.2.1	Tomato	nucleus	42.8	35.79
VIT_18s0001g13520.t01	Wine grape	nucleus	43.2	35.64
PGSC0003DMT400009514	Potato	nucleus	42.4	35.57
VIT_03s0038g00340.t01	Wine grape	nucleus	42.4	35.1
Os12t0209200-01	Rice	cytosol	29.2	34.76
Os06t0713000-01	Rice	nucleus	42.8	34.74
CDX73178	Canola	nucleus	42.4	32.92
Bra008204.1-P	Field mustard	nucleus	39.6	32.78
Bra015835.1-P	Field mustard	nucleus	42.0	32.71
CDY47514	Canola	nucleus	42.0	32.71
CDY13564	Canola	nucleus	39.6	32.67
CDY39040	Canola	nucleus	37.6	31.97
KRH29378	Soybean	nucleus	36.4	31.6
Solyc12g089240.1.1	Tomato	nucleus	41.2	31.31
PGSC0003DMT400075652	Potato	nucleus	41.2	31.21
CDX68124	Canola	nucleus	39.6	31.03
CDX85903	Canola	nucleus	39.6	31.03
KRH05902	Soybean	nucleus	40.4	30.89
Bra003748.1-P	Field mustard	nucleus	39.2	30.72
AT1G75540.1	Thale cress	nucleus	40.4	30.51
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	32.0	29.52
KRH24393	Soybean	nucleus	24.0	29.27
KRH60788	Soybean	nucleus	35.2	27.59
Os09t0527900-01	Rice	cytosol	22.8	27.01
Os01t0202500-01	Rice	cytosol, nucleus	32.8	23.16
Os06t0152200-01	Rice	nucleus	31.6	21.94
Os05t0204600-01	Rice	cytosol, nucleus, plastid	32.4	21.43
Os04t0493000-01	Rice	cytosol	15.2	20.65

Protein Annotations

MapMan:15.5.1.1	Gene3D:3.30.40.200	EntrezGene:4336535	EMBL:AK061333	ProteinID:BAF15353.1	ProteinID:BAS90287.1
ProteinID:CAE02785.2	ProteinID:EAZ31488.1	GO:GO:0000989	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009628	GO:GO:0009640
GO:GO:0009791	GO:GO:0009987	EMBL:HQ858844	InterPro:IPR000315	EnsemblPlantsGene:Os04g0540200	EnsemblPlants:Os04t0540200-01
PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832	PANTHER:PTHR31832:SF10	UniProt:Q7XR92	SMART:SM00336
UniParc:UPI00001B157D	RefSeq:XP_015634023.1	InterPro:Znf_B-box	SEG:seg	:	:

Description

B-box-containing protein 13Zinc finger, B-box domain containing protein. (Os04t0540200-01)

Coordinates

chr4:+:27027267..27029421

Molecular Weight (calculated)

26735.1 Da

IEP (calculated)

4.900

GRAVY (calculated)

-0.321

Length

250 amino acids

Sequence
(BLAST)

001: MKVQCDVCAA EAASVFCCAD EAALCDACDR RVHSANKLAG KHRRFSLLQP LASSSSAQKP PLCDICQEKR GFLFCKEDRA ILCRECDVTV HTTSELTRRH
101: GRFLLTGVRL SSAPMDSPAP SEEEEEEAGE DYSCSPSSVA GTAAGSASDG SSISEYLTKT LPGWHVEDFL VDEATAASSS SDGLFQGGLL AQIGGVPDGY
201: AAWAGREQLH SGVAVAADER ASRERWVPQM NAEWGAGSKR PRASPPCLYW

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.