Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003748.1-P | Field mustard | nucleus | 81.57 | 84.64 |
| CDX68124 | Canola | nucleus | 81.57 | 84.64 |
| CDX85903 | Canola | nucleus | 81.57 | 84.64 |
| VIT_18s0001g13520.t01 | Wine grape | nucleus | 48.64 | 53.14 |
| KRH17384 | Soybean | nucleus | 44.11 | 52.9 |
| Zm00001d017412_P001 | Maize | nucleus | 21.45 | 50.0 |
| PGSC0003DMT400009514 | Potato | nucleus | 44.11 | 48.99 |
| GSMUA_Achr4P05180_001 | Banana | cytosol | 29.91 | 48.77 |
| KRH51757 | Soybean | nucleus | 35.95 | 48.57 |
| Solyc04g081020.2.1 | Tomato | nucleus | 43.81 | 48.49 |
| GSMUA_Achr11P... | Banana | cytosol | 28.7 | 47.98 |
| GSMUA_Achr9P20930_001 | Banana | cytosol | 26.89 | 47.85 |
| GSMUA_Achr11P... | Banana | nucleus | 26.59 | 47.57 |
| AT4G39070.1 | Thale cress | cytosol | 33.53 | 45.87 |
| KRH61078 | Soybean | nucleus | 36.56 | 45.49 |
| KRH05902 | Soybean | nucleus | 44.11 | 44.65 |
| Solyc12g089240.1.1 | Tomato | nucleus | 43.2 | 43.47 |
| PGSC0003DMT400075652 | Potato | nucleus | 43.2 | 43.33 |
| TraesCS6B01G285200.1 | Wheat | nucleus | 30.51 | 42.44 |
| TraesCS6A01G239300.1 | Wheat | nucleus | 30.21 | 42.37 |
| TraesCS6D01G221700.1 | Wheat | nucleus | 29.91 | 41.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.14 | 40.65 |
| GSMUA_Achr11P... | Banana | nucleus | 32.02 | 40.46 |
| Os04t0540200-01 | Rice | nucleus | 30.51 | 40.4 |
| TraesCS2A01G388500.1 | Wheat | nucleus | 30.82 | 39.53 |
| Zm00001d025957_P001 | Maize | nucleus | 30.51 | 39.45 |
| Os02t0646200-01 | Rice | nucleus | 32.02 | 39.41 |
| Zm00001d002806_P001 | Maize | nucleus | 30.21 | 38.76 |
| TraesCS2D01G386300.1 | Wheat | nucleus | 30.51 | 38.55 |
| Zm00001d051309_P001 | Maize | nucleus | 32.02 | 38.27 |
| OQU82040 | Sorghum | nucleus | 30.51 | 38.11 |
| AT4G10240.1 | Thale cress | nucleus | 18.43 | 37.65 |
| TraesCS2B01G406600.2 | Wheat | nucleus | 29.91 | 37.36 |
| EES07539 | Sorghum | nucleus | 32.33 | 36.27 |
| HORVU2Hr1G092460.9 | Barley | cytosol, mitochondrion, nucleus | 30.51 | 35.44 |
| HORVU7Hr1G091180.1 | Barley | nucleus | 29.31 | 35.27 |
| TraesCS7D01G379900.1 | Wheat | nucleus | 29.91 | 34.74 |
| AT1G06040.1 | Thale cress | nucleus | 24.77 | 33.06 |
| Os06t0713000-01 | Rice | nucleus | 30.51 | 32.79 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 16.92 | 32.56 |
| TraesCS7B01G286300.1 | Wheat | nucleus | 30.51 | 32.48 |
| Zm00001d036418_P001 | Maize | nucleus | 25.98 | 31.97 |
| TraesCS7A01G383400.3 | Wheat | nucleus | 30.21 | 31.95 |
| AT2G31380.1 | Thale cress | nucleus | 22.96 | 31.93 |
| EER90373 | Sorghum | cytosol | 27.49 | 29.84 |
| GSMUA_Achr1P07740_001 | Banana | nucleus | 33.84 | 28.57 |
| AT1G78600.2 | Thale cress | nucleus | 27.19 | 28.21 |
| GSMUA_Achr4P04990_001 | Banana | extracellular, golgi | 32.33 | 27.94 |
| Zm00001d014765_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 28.7 | 26.76 |
| AT4G38960.3 | Thale cress | cytosol | 16.92 | 24.78 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:843890 | ProteinID:AAF87126.1 | EMBL:AB493536 | ProteinID:AEE35731.1 |
| ArrayExpress:AT1G75540 | EnsemblPlantsGene:AT1G75540 | RefSeq:AT1G75540 | TAIR:AT1G75540 | RefSeq:AT1G75540-TAIR-G | EnsemblPlants:AT1G75540.1 |
| TAIR:AT1G75540.1 | GO:GO:0000989 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009641 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046872 | InterPro:IPR000315 | RefSeq:NP_177686.1 | PFAM:PF00643 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0004507 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF6 | UniProt:Q9LQZ7 | SMART:SM00336 |
| SUPFAM:SSF57845 | Symbol:STH2 | UniParc:UPI0000127E49 | InterPro:Znf_B-box | SEG:seg | : |
Description
BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
Coordinates
chr1:+:28365824..28367738
Molecular Weight (calculated)
36635.4 Da
IEP (calculated)
6.910
GRAVY (calculated)
-0.741
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.