Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86539 | Canola | nucleus | 86.69 | 89.21 |
| Bra030635.1-P | Field mustard | nucleus | 85.48 | 87.97 |
| CDY15558 | Canola | nucleus | 84.27 | 87.08 |
| Bra015469.1-P | Field mustard | nucleus | 84.27 | 86.01 |
| Bra032441.1-P | Field mustard | nucleus | 79.03 | 83.76 |
| CDY06194 | Canola | nucleus | 78.63 | 83.33 |
| CDY09992 | Canola | nucleus | 78.63 | 82.98 |
| AT2G31380.1 | Thale cress | nucleus | 68.95 | 71.85 |
| KRH24617 | Soybean | nucleus | 62.5 | 65.13 |
| KRH29616 | Soybean | nucleus | 62.1 | 64.71 |
| KRH23214 | Soybean | nucleus | 61.29 | 63.6 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 60.89 | 63.18 |
| PGSC0003DMT400069498 | Potato | nucleus | 59.27 | 63.09 |
| Solyc06g073180.2.1 | Tomato | nucleus | 58.47 | 62.23 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 55.24 | 57.56 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 55.65 | 54.33 |
| Zm00001d051018_P002 | Maize | extracellular | 52.42 | 51.38 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 52.82 | 51.17 |
| EES07119 | Sorghum | nucleus | 53.23 | 50.19 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 52.42 | 50.0 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 52.42 | 50.0 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 50.4 | 49.21 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 50.81 | 48.84 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 50.0 | 48.06 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 50.0 | 47.15 |
| EES12431 | Sorghum | nucleus | 50.81 | 47.01 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 50.0 | 45.76 |
| AT4G10240.1 | Thale cress | nucleus | 27.02 | 41.36 |
| KRH10122 | Soybean | nucleus | 61.69 | 39.03 |
| Os04t0493000-01 | Rice | cytosol | 28.63 | 38.59 |
| AT2G21320.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.18 | 31.98 |
| AT4G39070.1 | Thale cress | cytosol | 28.23 | 28.93 |
| AT1G78600.2 | Thale cress | nucleus | 36.69 | 28.53 |
| AT1G75540.1 | Thale cress | nucleus | 33.06 | 24.77 |
| AT4G38960.3 | Thale cress | cytosol | 21.77 | 23.89 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EntrezGene:837113 | ProteinID:AAF80128.1 | ProteinID:AEE27933.1 | ArrayExpress:AT1G06040 |
| EnsemblPlantsGene:AT1G06040 | RefSeq:AT1G06040 | TAIR:AT1G06040 | RefSeq:AT1G06040-TAIR-G | EnsemblPlants:AT1G06040.1 | TAIR:AT1G06040.1 |
| EMBL:AY045794 | EMBL:AY079377 | Unigene:At.23289 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003712 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010228 | GO:GO:0046872 | GO:GO:0048573 |
| GO:GO:0080167 | InterPro:IPR000315 | RefSeq:NP_172094.1 | PFAM:PF00643 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | UniProt:Q96288 | SMART:SM00336 | Symbol:STO | UniParc:UPI00000017A7 |
| EMBL:X95572 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
Coordinates
chr1:-:1828340..1829983
Molecular Weight (calculated)
27642.4 Da
IEP (calculated)
5.527
GRAVY (calculated)
-0.526
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.