Factsheet for GSMUA_Achr6P21320_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P18060_001
GSMUA_Achr3P20130_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr8P14660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	GSMUA_Achr11P...	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr2P18060_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr4P19000_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr5P14120_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr8P14660_001	AT1G32230.1	11018516
AT1G06040.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978
AT1G06040.1	GSMUA_Achr3P20130_001	AT2G32950.1	11226162
AT1G06040.1	GSMUA_AchrUn_...	AT2G32950.1	11226162
AT2G31380.1	GSMUA_Achr3P20130_001	AT2G32950.1	11226162
AT2G31380.1	GSMUA_AchrUn_...	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P02360_001	Banana	cytosol	75.98	81.09
VIT_05s0102g00750.t01	Wine grape	nucleus	57.87	61.51
PGSC0003DMT400069498	Potato	nucleus	55.91	60.94
KRH24617	Soybean	nucleus	55.51	59.24
KRH29616	Soybean	nucleus	55.51	59.24
Solyc06g073180.2.1	Tomato	nucleus	54.33	59.23
KRH23214	Soybean	nucleus	55.51	59.0
CDX86539	Canola	nucleus	55.91	58.92
Bra030635.1-P	Field mustard	nucleus	55.51	58.51
CDY15558	Canola	nucleus	55.12	58.33
Bra015469.1-P	Field mustard	nucleus	54.72	57.2
Bra021734.1-P	Field mustard	nucleus	53.94	57.08
CDY19093	Canola	nucleus	53.54	56.9
CDY06194	Canola	nucleus	52.36	56.84
AT2G31380.1	Thale cress	nucleus	53.15	56.72
Bra032441.1-P	Field mustard	nucleus	51.97	56.41
CDY15382	Canola	nucleus	53.54	56.2
CDY56613	Canola	nucleus	53.54	55.97
AT1G06040.1	Thale cress	nucleus	54.33	55.65
Bra018249.1-P	Field mustard	nucleus	53.15	55.56
TraesCS6A01G216400.1	Wheat	extracellular	55.91	55.47
Zm00001d051018_P002	Maize	extracellular	55.12	55.34
CDY09992	Canola	nucleus	51.18	55.32
CDY10800	Canola	nucleus	52.76	55.14
EES07119	Sorghum	nucleus	57.09	55.13
TraesCS6D01G199200.1	Wheat	extracellular	55.51	54.23
TraesCS6B01G246500.1	Wheat	extracellular	55.12	53.85
EES12431	Sorghum	nucleus	56.3	53.36
TraesCS2A01G348900.1	Wheat	nucleus	53.15	53.15
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	55.91	52.4
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.15	52.33
TraesCS2B01G367300.2	Wheat	nucleus	53.15	52.33
TraesCS2A01G366100.2	Wheat	nucleus	52.36	50.57
Os04t0493000-01	Rice	cytosol	33.46	46.2
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	24.41	44.29
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	27.17	38.12
GSMUA_Achr11P...	Banana	nucleus	29.53	37.88
GSMUA_Achr11P...	Banana	nucleus	27.17	37.3
GSMUA_Achr9P20930_001	Banana	cytosol	26.38	36.02
KRH10122	Soybean	nucleus	55.12	35.71
GSMUA_Achr11P...	Banana	cytosol	27.56	35.35
GSMUA_Achr4P05180_001	Banana	cytosol	27.95	34.98
GSMUA_Achr3P16700_001	Banana	nucleus	26.77	34.87
GSMUA_Achr10P...	Banana	cytosol	24.02	29.33
GSMUA_Achr6P21590_001	Banana	nucleus	33.07	28.0
GSMUA_Achr11P...	Banana	nucleus	28.74	27.86
GSMUA_Achr6P14750_001	Banana	nucleus	32.28	27.15
GSMUA_AchrUn_...	Banana	nucleus	29.13	26.62
GSMUA_Achr1P07770_001	Banana	cytosol	24.02	25.21
GSMUA_Achr1P07740_001	Banana	nucleus	30.71	19.9
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	27.95	18.54
GSMUA_Achr6P17960_001	Banana	cytosol	14.57	17.29

Protein Annotations

EnsemblPlants:GSMUA_Achr6P21320_001	EnsemblPlants:GSMUA_Achr6T21320_001	EnsemblPlantsGene:GSMUA_Achr6G21320_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	PFAM:PF00643	PFscan:PS50119	SMART:SM00336	UniParc:UPI000294C4D4
UniProt:M0T8Y0	MapMan:15.5.1.1	:	:	:	:

Description

Salt tolerance protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G21320_001]

Coordinates

chr6:-:17015748..17019331

Molecular Weight (calculated)

28059.0 Da

IEP (calculated)

4.620

GRAVY (calculated)

-0.380

Length

254 amino acids

Sequence
(BLAST)

001: MKIQCDVCEK APATLICCAD EAALCASCDV EIHLANKLAS KHQRLRLDCL SNKLPRCDIC QEKAAFIFCV EDRALFCRDC DEPIHVAGTL TGNHQRYLAT
101: GIRVAANAMC NKDFNDNTEP PNQGPATPAA KVPETPQTIS SFMDSAWAAD EFLQLYDQET GYKGSPVGYE ELDWFADIGL FHDQLPKATQ TAAQVPELPT
201: TQASNTGFYR ANKFPVPQAS DTGFYRGNKC GTLFKKPRLE ISDEEEYFTV PDLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.