Factsheet for GSMUA_Achr10P16280_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	57.46	74.29
GSMUA_Achr11P...	Banana	nucleus	66.85	61.11
GSMUA_Achr3P16700_001	Banana	nucleus	55.25	51.28
GSMUA_Achr11P...	Banana	nucleus	36.46	35.68
GSMUA_Achr11P...	Banana	cytosol	38.67	35.35
GSMUA_Achr9P20930_001	Banana	cytosol	35.36	34.41
GSMUA_Achr4P05180_001	Banana	cytosol	35.36	31.53
GSMUA_Achr6P21590_001	Banana	nucleus	51.93	31.33
GSMUA_Achr9P02360_001	Banana	cytosol	40.33	30.67
GSMUA_Achr6P14750_001	Banana	nucleus	48.62	29.14
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	38.12	27.17
GSMUA_Achr10P...	Banana	cytosol	29.83	25.96
GSMUA_AchrUn_...	Banana	nucleus	37.57	24.46
GSMUA_Achr11P...	Banana	nucleus	35.36	24.43
GSMUA_Achr1P07770_001	Banana	cytosol	32.6	24.38
GSMUA_Achr1P07740_001	Banana	nucleus	37.57	17.35
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	36.46	17.23
GSMUA_Achr6P17960_001	Banana	cytosol	18.23	15.42

Protein Annotations

EnsemblPlants:GSMUA_Achr10P16280_001	EnsemblPlants:GSMUA_Achr10T16280_001	EnsemblPlantsGene:GSMUA_Achr10G16280_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336	UniParc:UPI0002962C10
UniProt:M0RIQ3	MapMan:15.5.1.1	:	:	:	:

Description

Probable salt tolerance-like protein At1g78600 [Source:GMGC_GENE;Acc:GSMUA_Achr10G16280_001]

Coordinates

chr10:+:23863084..23865465

Molecular Weight (calculated)

19819.4 Da

IEP (calculated)

6.484

GRAVY (calculated)

-0.196

Length

181 amino acids

Sequence
(BLAST)

001: MKIQCDVCER ATAAVLCCAD EAALCWGCDE KVHAANKLAG MHQRVPLLLP ANSSSSSSHI PSCDICQEKA GYFFCLEDRA MLCRQCDVTI HTASPYVSSH
101: RRFLITGVRV GLQDKITSNS NNGSSCSNSS NSTLRSAVSI DSIADKMVVE EGVKSQWPWH ELLDSLELDQ RYRLSNPGSF S

Best Arabidopsis Sequence Match ( AT1G78600.2 )
(BLAST)

001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKTDVLKMKL LDSACLGKKL EKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS
301: TPYTGSSPNQ RVGKRRRRF

Arabidopsis Description

LZF1Light-regulated zinc finger protein 1 [Source:UniProtKB/TrEMBL;Acc:F4IBS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.