Factsheet for GSMUA_Achr4P04990_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P20130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75540.1	GSMUA_Achr3P20130_001	AT2G32950.1	17965270
AT1G75540.1	GSMUA_AchrUn_...	AT2G32950.1	17965270

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05180_001	Banana	cytosol	33.16	62.56
GSMUA_Achr11P...	Banana	nucleus	39.95	58.4
GSMUA_Achr9P20930_001	Banana	cytosol	27.94	57.53
GSMUA_Achr11P...	Banana	cytosol	27.15	52.53
GSMUA_Achr11P...	Banana	nucleus	25.33	52.43
GSMUA_AchrUn_...	Banana	nucleus	35.77	49.28
Solyc01g110180.2.1	Tomato	nucleus	24.28	45.81
CDY41957	Canola	nucleus	24.8	44.81
GSMUA_Achr8P16260_001	Banana	endoplasmic reticulum	16.19	44.29
CDY42602	Canola	nucleus	26.11	42.73
Bra010713.1-P	Field mustard	nucleus	25.85	41.08
CDX90306	Canola	nucleus	25.85	41.08
Bra011879.1-P	Field mustard	nucleus	25.59	41.0
CDY12117	Canola	nucleus	25.85	40.91
KRH51476	Soybean	nucleus	24.8	40.77
AT4G39070.1	Thale cress	cytosol	25.59	40.5
KRH51757	Soybean	nucleus	25.59	40.0
KRH17384	Soybean	nucleus	27.94	38.77
KRH61078	Soybean	nucleus	25.85	37.22
PGSC0003DMT400079507	Potato	nucleus	24.28	36.9
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	17.23	36.46
VIT_18s0001g13520.t01	Wine grape	nucleus	28.46	35.97
CDY39040	Canola	nucleus	27.42	35.71
PGSC0003DMT400009514	Potato	nucleus	27.68	35.57
Solyc04g081020.2.1	Tomato	nucleus	27.68	35.45
Bra008204.1-P	Field mustard	nucleus	27.68	35.1
GSMUA_Achr11P...	Banana	nucleus	17.75	34.34
KRH05902	Soybean	nucleus	29.24	34.25
GSMUA_Achr1P07740_001	Banana	nucleus	34.99	34.18
CDY13564	Canola	nucleus	26.63	33.66
Bra015835.1-P	Field mustard	nucleus	28.2	33.64
CDY47514	Canola	nucleus	28.2	33.64
CDX73178	Canola	nucleus	28.2	33.54
CDX85903	Canola	nucleus	27.42	32.92
CDX68124	Canola	nucleus	27.42	32.92
Bra003748.1-P	Field mustard	nucleus	27.15	32.6
AT1G75540.1	Thale cress	nucleus	27.94	32.33
GSMUA_Achr3P16700_001	Banana	nucleus	16.45	32.31
VIT_03s0038g00340.t01	Wine grape	nucleus	25.33	32.12
KRH29378	Soybean	nucleus	24.02	31.94
KRH60788	Soybean	nucleus	26.11	31.35
Solyc12g089240.1.1	Tomato	nucleus	26.89	31.31
PGSC0003DMT400075652	Potato	nucleus	26.89	31.21
GSMUA_Achr9P02360_001	Banana	cytosol	19.06	30.67
KRH24393	Soybean	nucleus	16.19	30.24
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	18.54	27.95
GSMUA_Achr6P21590_001	Banana	nucleus	20.37	26.0
GSMUA_Achr6P14750_001	Banana	nucleus	20.37	25.83
GSMUA_Achr10P...	Banana	cytosol	13.58	25.0
GSMUA_Achr1P07770_001	Banana	cytosol	13.32	21.07
GSMUA_Achr6P17960_001	Banana	cytosol	8.88	15.89

Protein Annotations

EnsemblPlants:GSMUA_Achr4P04990_001	EnsemblPlants:GSMUA_Achr4T04990_001	EnsemblPlantsGene:GSMUA_Achr4G04990_001	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000315
InterPro:Znf_B-box	PANTHER:PTHR31832	PANTHER:PTHR31832:SF6	PFAM:PF00643	PFscan:PS50119	SEG:seg
SMART:SM00336	TMHMM:TMhelix	UniParc:UPI000295F7C3	UniProt:M0SL66	MapMan:15.5.1.1	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G04990_001]

Coordinates

chr4:-:3893785..3895664

Molecular Weight (calculated)

42592.7 Da

IEP (calculated)

7.463

GRAVY (calculated)

-0.174

Length

383 amino acids

Sequence
(BLAST)

001: MRSFYVTPCD AYIAFIHVGM YIKIPMSAML PYHGASPTCV RRAISYRDDK ASLQWKRGFL GWPPSYVSIN SWEPSSCRLS LSLSLLFQLI FYNRSPTTLD
101: LFLHHQSLIS LHASIDQRLK KTFRRGGREA EEWKSGGCVM KILCDVCGKK EALVFCCADE AALCDACDRR VHCANKLSGK HRRFSLDYPS VHSNPLCDVC
201: QEKRAILFCQ EDRAILCREC DSAIHSTNHL TMKHSRFLLT GVRFSAAPLS APDTEAAAAA NSRDASASFS ATSSGNASSI SEYLTKTCPG WHVEDLLVED
301: TAAAPAMDGF FEVNMSLPCL DLHGGGLEDI CAAHAPQFLP HCPPAAHYQH WLVDKEVASS FPHRDKSGKE RWSDDAFVVR MNS

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.