CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29378	Soybean	nucleus	83.9	59.72
KRH51476	Soybean	nucleus	35.12	30.9
GSMUA_Achr4P05180_001	Banana	cytosol	30.24	30.54
CDY41957	Canola	nucleus	31.22	30.19
Zm00001d017412_P001	Maize	nucleus	20.49	29.58
GSMUA_Achr11P...	Banana	cytosol	28.29	29.29
Solyc01g110180.2.1	Tomato	nucleus	28.29	28.57
KRH51757	Soybean	nucleus	34.15	28.57
CDY42602	Canola	nucleus	31.71	27.78
GSMUA_Achr11P...	Banana	nucleus	24.88	27.57
Bra011879.1-P	Field mustard	nucleus	31.71	27.2
GSMUA_Achr9P20930_001	Banana	cytosol	24.39	26.88
TraesCS6B01G285200.1	Wheat	nucleus	30.73	26.47
CDY12117	Canola	nucleus	31.22	26.45
KRH61078	Soybean	nucleus	34.15	26.32
TraesCS6D01G221700.1	Wheat	nucleus	30.24	26.05
TraesCS6A01G239300.1	Wheat	nucleus	29.76	25.85
Bra010713.1-P	Field mustard	nucleus	30.24	25.73
CDX90306	Canola	nucleus	30.24	25.73
AT4G39070.1	Thale cress	cytosol	30.24	25.62
GSMUA_Achr11P...	Banana	nucleus	32.68	25.57
KRH17384	Soybean	nucleus	34.15	25.36
PGSC0003DMT400079507	Potato	nucleus	30.73	25.0
GSMUA_AchrUn_...	Banana	nucleus	33.66	24.82
TraesCS2A01G388500.1	Wheat	nucleus	30.73	24.42
TraesCS2D01G386300.1	Wheat	nucleus	30.73	24.05
Os04t0540200-01	Rice	nucleus	29.27	24.0
KRH60788	Soybean	nucleus	36.59	23.51
Os02t0646200-01	Rice	nucleus	30.73	23.42
TraesCS2B01G406600.2	Wheat	nucleus	30.24	23.4
Zm00001d002806_P001	Maize	nucleus	28.29	22.48
Zm00001d025957_P001	Maize	nucleus	27.8	22.27
OQU82040	Sorghum	nucleus	28.78	22.26
EES07539	Sorghum	nucleus	31.22	21.69
Zm00001d051309_P001	Maize	nucleus	29.27	21.66
KRH24617	Soybean	nucleus	24.88	21.43
VIT_03s0038g00340.t01	Wine grape	nucleus	31.22	21.19
HORVU2Hr1G092460.9	Barley	cytosol, mitochondrion, nucleus	29.27	21.05
KRH29616	Soybean	nucleus	24.39	21.01
KRH05902	Soybean	nucleus	33.17	20.8
KRH24373	Soybean	nucleus	21.46	20.75
KRH28766	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	19.51	20.73
TraesCS7D01G379900.1	Wheat	nucleus	28.29	20.35
KRH23214	Soybean	nucleus	23.41	20.08
HORVU7Hr1G091180.1	Barley	nucleus	26.83	20.0
KRH29344	Soybean	nucleus	20.49	19.81
KRH76689	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	20.0	19.52
Os06t0713000-01	Rice	nucleus	29.27	19.48
Zm00001d036418_P001	Maize	nucleus	25.37	19.33
TraesCS7B01G286300.1	Wheat	nucleus	28.78	18.97
TraesCS7A01G383400.3	Wheat	nucleus	28.29	18.53
KRH37922	Soybean	nucleus	26.34	18.49
EER90373	Sorghum	cytosol	26.34	17.7
KRH21881	Soybean	nucleus	24.88	17.41
Zm00001d014765_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	29.76	17.18
GSMUA_Achr1P07740_001	Banana	nucleus	31.71	16.58
GSMUA_Achr4P04990_001	Banana	extracellular, golgi	30.24	16.19
KRH27404	Soybean	extracellular, vacuole	24.39	13.37
KRH10122	Soybean	nucleus	23.41	12.24

Protein Annotations

EntrezGene:102669047	MapMan:15.5.1.1	EMBL:ACUP02007175	EnsemblPlantsGene:GLYMA_12G038700	GO:GO:0000989	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009628	GO:GO:0009640	GO:GO:0009791	GO:GO:0009987	UniProt:I1LPY6	InterPro:IPR000315
EnsemblPlants:KRH24393	ProteinID:KRH24393	ProteinID:KRH24393.1	PFAM:PF00643	PFscan:PS50119	PANTHER:PTHR31832
PANTHER:PTHR31832:SF18	SMART:SM00336	UniParc:UPI000296FA71	InterPro:Znf_B-box	:	:

Description

hypothetical protein

Coordinates

chr12:-:2803881..2805138

Molecular Weight (calculated)

23137.5 Da

IEP (calculated)

6.824

GRAVY (calculated)

-0.375

Length

205 amino acids

Sequence
(BLAST)

001: MKIQCDVCHK EVASFFCPSD EASLCHACDR TIHHPNKLSE KHKRFSLHHP ISTKDSPLCD ICHEKHMACD KVSVSTSSIS EYLIQTIPGY CMEDLLDASF
101: ASNSLSKDYE HQSAFQNQDV QVSMRSFPLQ TWVPQSQGGS PQRSFTSNLY PQIDSLVGVM EMPKAKAGEG YSNWIYNYDY AAYKLPSICP PLIKKMQTLS
201: LINCM

Best Arabidopsis Sequence Match ( AT1G75540.1 )
(BLAST)

001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W

Arabidopsis Description

BBX21B-box zinc finger protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.