Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24617 | Soybean | nucleus | 82.43 | 82.77 |
| KRH29616 | Soybean | nucleus | 81.17 | 81.51 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 75.73 | 75.73 |
| Solyc06g073180.2.1 | Tomato | nucleus | 67.78 | 69.53 |
| PGSC0003DMT400069498 | Potato | nucleus | 67.36 | 69.1 |
| CDY06194 | Canola | nucleus | 61.92 | 63.25 |
| Bra032441.1-P | Field mustard | nucleus | 61.51 | 62.82 |
| CDY09992 | Canola | nucleus | 61.51 | 62.55 |
| CDX86539 | Canola | nucleus | 62.34 | 61.83 |
| AT1G06040.1 | Thale cress | nucleus | 63.6 | 61.29 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 60.67 | 60.92 |
| CDY15558 | Canola | nucleus | 61.09 | 60.83 |
| Bra030635.1-P | Field mustard | nucleus | 61.09 | 60.58 |
| Bra015469.1-P | Field mustard | nucleus | 61.51 | 60.49 |
| KRH10122 | Soybean | nucleus | 97.07 | 59.18 |
| Bra021734.1-P | Field mustard | nucleus | 59.41 | 59.17 |
| CDY19093 | Canola | nucleus | 59.0 | 59.0 |
| CDY56613 | Canola | nucleus | 59.83 | 58.85 |
| CDY10800 | Canola | nucleus | 59.0 | 58.02 |
| Bra018249.1-P | Field mustard | nucleus | 59.0 | 58.02 |
| AT2G31380.1 | Thale cress | nucleus | 57.74 | 57.98 |
| CDY15382 | Canola | nucleus | 58.58 | 57.85 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 59.0 | 55.51 |
| EES07119 | Sorghum | nucleus | 59.83 | 54.37 |
| Zm00001d051018_P002 | Maize | extracellular | 57.32 | 54.15 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 55.65 | 51.95 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 55.65 | 51.15 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 53.56 | 50.39 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 54.81 | 50.38 |
| EES12431 | Sorghum | nucleus | 56.49 | 50.37 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.56 | 49.61 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 53.14 | 49.22 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 53.97 | 49.05 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 54.81 | 48.34 |
| Os04t0493000-01 | Rice | cytosol | 32.22 | 41.85 |
| KRH51757 | Soybean | nucleus | 31.8 | 31.02 |
| KRH37922 | Soybean | nucleus | 37.66 | 30.82 |
| KRH21881 | Soybean | nucleus | 37.66 | 30.72 |
| KRH61078 | Soybean | nucleus | 32.64 | 29.32 |
| KRH28766 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.43 | 29.02 |
| KRH17384 | Soybean | nucleus | 33.05 | 28.62 |
| KRH51476 | Soybean | nucleus | 26.78 | 27.47 |
| KRH24373 | Soybean | nucleus | 24.27 | 27.36 |
| KRH76689 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 23.43 | 26.67 |
| KRH29344 | Soybean | nucleus | 23.43 | 26.42 |
| KRH29378 | Soybean | nucleus | 28.45 | 23.61 |
| KRH05902 | Soybean | nucleus | 32.22 | 23.55 |
| KRH24393 | Soybean | nucleus | 20.08 | 23.41 |
| KRH27404 | Soybean | extracellular, vacuole | 36.4 | 23.26 |
| KRH60788 | Soybean | nucleus | 27.62 | 20.69 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EMBL:ACUP02008458 | EnsemblPlantsGene:GLYMA_13G344700 | GO:GO:0000989 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009640 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0046872 | UniProt:I1M564 |
| InterPro:IPR000315 | EnsemblPlants:KRH23214 | ProteinID:KRH23214 | ProteinID:KRH23214.1 | PFAM:PF00643 | PFscan:PS50119 |
| SMART:SM00336 | UniParc:UPI000233B0E2 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr13:-:43563135..43565875
Molecular Weight (calculated)
26364.0 Da
IEP (calculated)
4.782
GRAVY (calculated)
-0.321
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCER APATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLQCL SSKLPRCDIC QDKPAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT
101: GIRVASSSNC TKDNEKSHLE PPTRNAQQVS AKIPPQQVPS FTSSWAVDDL LELTAFESPE KKESLQFGEL EWLTDVGIFG EQFAQEALAA AEVPQLPVTH
201: NSSSVASYRT SKSYMSHKKP RIEVLNDDDD EYFTVPDLG
101: GIRVASSSNC TKDNEKSHLE PPTRNAQQVS AKIPPQQVPS FTSSWAVDDL LELTAFESPE KKESLQFGEL EWLTDVGIFG EQFAQEALAA AEVPQLPVTH
201: NSSSVASYRT SKSYMSHKKP RIEVLNDDDD EYFTVPDLG
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.