Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005541.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G31380.1 | Bra005541.1-P | AT2G32950.1 | 11226162 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19093 | Canola | nucleus | 97.92 | 98.33 |
| CDY15382 | Canola | nucleus | 97.08 | 96.28 |
| Bra018249.1-P | Field mustard | nucleus | 91.67 | 90.53 |
| AT2G31380.1 | Thale cress | nucleus | 87.5 | 88.24 |
| Bra030635.1-P | Field mustard | nucleus | 72.92 | 72.61 |
| Bra032441.1-P | Field mustard | nucleus | 69.17 | 70.94 |
| Bra015469.1-P | Field mustard | nucleus | 71.25 | 70.37 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 61.67 | 61.92 |
| KRH23214 | Soybean | nucleus | 59.17 | 59.41 |
| PGSC0003DMT400069498 | Potato | nucleus | 57.5 | 59.23 |
| KRH24617 | Soybean | nucleus | 58.33 | 58.82 |
| Solyc06g073180.2.1 | Tomato | nucleus | 57.08 | 58.8 |
| KRH29616 | Soybean | nucleus | 57.92 | 58.4 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 56.25 | 56.72 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 57.08 | 53.94 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 53.33 | 50.0 |
| Zm00001d051018_P002 | Maize | extracellular | 51.67 | 49.01 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 52.5 | 48.46 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 52.5 | 48.46 |
| EES07119 | Sorghum | nucleus | 52.08 | 47.53 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 51.25 | 45.39 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 47.92 | 45.28 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 48.33 | 44.96 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 47.5 | 44.19 |
| EES12431 | Sorghum | nucleus | 49.17 | 44.03 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 47.92 | 43.73 |
| KRH10122 | Soybean | nucleus | 59.17 | 36.22 |
| Os04t0493000-01 | Rice | cytosol | 27.5 | 35.87 |
| Bra031180.1-P | Field mustard | cytosol | 24.58 | 31.38 |
| Bra010718.1-P | Field mustard | cytosol | 22.5 | 30.0 |
| Bra035051.1-P | Field mustard | nucleus | 36.25 | 29.79 |
| Bra033588.1-P | Field mustard | cytosol | 22.5 | 29.67 |
| Bra008371.1-P | Field mustard | nucleus | 34.58 | 28.52 |
| Bra003640.1-P | Field mustard | nucleus | 33.75 | 28.12 |
| Bra011879.1-P | Field mustard | nucleus | 25.42 | 25.52 |
| Bra008204.1-P | Field mustard | nucleus | 32.08 | 25.5 |
| Bra010713.1-P | Field mustard | nucleus | 25.0 | 24.9 |
| Bra003748.1-P | Field mustard | nucleus | 32.08 | 24.14 |
| Bra015835.1-P | Field mustard | nucleus | 31.67 | 23.68 |
Protein Annotations
| MapMan:15.5.1.1 | Gene3D:3.30.40.200 | EnsemblPlantsGene:Bra021734 | EnsemblPlants:Bra021734.1 | EnsemblPlants:Bra021734.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | GO:GO:0046872 |
| InterPro:IPR000315 | UniProt:M4DYY7 | PFAM:PF00643 | PFscan:PS50119 | PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 |
| SMART:SM00336 | UniParc:UPI0002544B91 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
AT2G31380 (E=4e-115) STH | STH; protein domain specific binding / transcription factor/ zinc ion binding
Coordinates
chrA04:-:14156947..14157935
Molecular Weight (calculated)
26704.4 Da
IEP (calculated)
4.723
GRAVY (calculated)
-0.395
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATLICCAD EAALCASCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CSKEVEMNHF DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKQ KEPLDLGELD WLSEMGFFGD QPDQEALPAA EVPELAVSHL
201: AHVHSYNRPI KSTNVSNKKP RLEIRYDDDD EQHFLVPDIG
101: GIRVALSSTS CSKEVEMNHF DPPNQQILSK PTIQQSAAPS PPWAGDEFFR YSDLECSNKQ KEPLDLGELD WLSEMGFFGD QPDQEALPAA EVPELAVSHL
201: AHVHSYNRPI KSTNVSNKKP RLEIRYDDDD EQHFLVPDIG
001: MKIQCDVCEK APATLICCAD EAALCAKCDV EVHAANKLAS KHQRLFLDSL STKFPPCDIC LEKAAFIFCV EDRALLCRDC DEATHAPNTR SANHQRFLAT
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
101: GIRVALSSTS CNQEVEKNHF DPSNQQSLSK PPTQQPAAPS PLWATDEFFS YSDLDCSNKE KEQLDLGELD WLAEMGLFGD QPDQEALPVA EVPELSFSHL
201: AHAHSYNRPM KSNVPNKKQR LEYRYDDEEE HFLVPDLG
Arabidopsis Description
BBX25B-box zinc finger protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9SID1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.