Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005541.1-P | |
| Bra023252.1-P | |
| Bra035511.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15558 | Canola | nucleus | 97.51 | 97.92 |
| Bra015469.1-P | Field mustard | nucleus | 87.97 | 87.24 |
| AT1G06040.1 | Thale cress | nucleus | 87.97 | 85.48 |
| Bra032441.1-P | Field mustard | nucleus | 82.99 | 85.47 |
| Bra021734.1-P | Field mustard | nucleus | 72.61 | 72.92 |
| Bra018249.1-P | Field mustard | nucleus | 72.2 | 71.6 |
| VIT_05s0102g00750.t01 | Wine grape | nucleus | 62.24 | 62.76 |
| KRH29616 | Soybean | nucleus | 61.83 | 62.6 |
| KRH24617 | Soybean | nucleus | 61.83 | 62.6 |
| KRH23214 | Soybean | nucleus | 60.58 | 61.09 |
| PGSC0003DMT400069498 | Potato | nucleus | 58.92 | 60.94 |
| Solyc06g073180.2.1 | Tomato | nucleus | 57.68 | 59.66 |
| GSMUA_Achr9P02360_001 | Banana | cytosol | 58.09 | 58.82 |
| GSMUA_Achr6P21320_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 58.51 | 55.51 |
| TraesCS6A01G216400.1 | Wheat | extracellular | 56.02 | 52.73 |
| Zm00001d051018_P002 | Maize | extracellular | 55.19 | 52.57 |
| TraesCS6B01G246500.1 | Wheat | extracellular | 56.02 | 51.92 |
| EES07119 | Sorghum | nucleus | 56.43 | 51.71 |
| TraesCS6D01G199200.1 | Wheat | extracellular | 55.6 | 51.54 |
| TraesCS2D01G347300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 54.36 | 50.78 |
| TraesCS2A01G348900.1 | Wheat | nucleus | 53.11 | 50.39 |
| TraesCS2B01G367300.2 | Wheat | nucleus | 53.53 | 50.0 |
| TraesCS2A01G366100.2 | Wheat | nucleus | 53.53 | 49.05 |
| EES12431 | Sorghum | nucleus | 53.94 | 48.51 |
| Os02t0606200-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 54.36 | 48.34 |
| Os04t0493000-01 | Rice | cytosol | 29.46 | 38.59 |
| KRH10122 | Soybean | nucleus | 60.17 | 36.99 |
| Bra010718.1-P | Field mustard | cytosol | 21.99 | 29.44 |
| Bra011879.1-P | Field mustard | nucleus | 29.05 | 29.29 |
| Bra010713.1-P | Field mustard | nucleus | 29.05 | 29.05 |
| Bra008371.1-P | Field mustard | nucleus | 34.85 | 28.87 |
| Bra035051.1-P | Field mustard | nucleus | 34.85 | 28.77 |
| Bra031180.1-P | Field mustard | cytosol | 22.41 | 28.72 |
| Bra033588.1-P | Field mustard | cytosol | 21.58 | 28.57 |
| Bra003640.1-P | Field mustard | nucleus | 34.02 | 28.47 |
| Bra008204.1-P | Field mustard | nucleus | 34.44 | 27.48 |
| Bra015835.1-P | Field mustard | nucleus | 34.02 | 25.55 |
| Bra003748.1-P | Field mustard | nucleus | 33.61 | 25.39 |
Protein Annotations
| EnsemblPlants:Bra030635.1 | EnsemblPlants:Bra030635.1-P | EnsemblPlantsGene:Bra030635 | Gene3D:3.30.40.200 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:Znf_B-box |
| PANTHER:PTHR31832 | PANTHER:PTHR31832:SF8 | PFAM:PF00643 | PFscan:PS50119 | SMART:SM00336 | UniParc:UPI000254711B |
| UniProt:M4EPB5 | MapMan:15.5.1.1 | : | : | : | : |
Description
AT1G06040 (E=3e-120) STO | STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding
Coordinates
chrA08:+:20992942..20993863
Molecular Weight (calculated)
26842.7 Da
IEP (calculated)
5.774
GRAVY (calculated)
-0.447
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIQCDVCEK APATVICCAD EAALCPRCDV EIHAANKLAS KHQRLHLNAL ATKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANTR SANHQRLLAT
101: GIKVALSSTS CSSKNQPEPC NNQQKAKEIP AKTLSQQQPS SATPLPWAVD DFFHFSDPEC TDKQKGQLGL GELEWFSDMG FFGDQISQES LPAAEVPELS
201: VSHLGHVHSY RPMKSNVSYK KPRLEFRDDE EEEHFIVPDL G
101: GIKVALSSTS CSSKNQPEPC NNQQKAKEIP AKTLSQQQPS SATPLPWAVD DFFHFSDPEC TDKQKGQLGL GELEWFSDMG FFGDQISQES LPAAEVPELS
201: VSHLGHVHSY RPMKSNVSYK KPRLEFRDDE EEEHFIVPDL G
001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG
Arabidopsis Description
BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.