Factsheet for Bra015469.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra023252.1-P
Bra035511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06040.1	Bra023252.1-P	AT1G32230.1	11018516
AT1G06040.1	Bra035511.1-P	AT1G32230.1	11018516
AT1G06040.1	Bra023252.1-P	AT1G32230.1	19548978
AT1G06040.1	Bra035511.1-P	AT1G32230.1	19548978
AT1G06040.1	Bra005541.1-P	AT2G32950.1	11226162

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030635.1-P	Field mustard	nucleus	87.24	87.97
Bra032441.1-P	Field mustard	nucleus	82.72	85.9
AT1G06040.1	Thale cress	nucleus	86.01	84.27
Bra018249.1-P	Field mustard	nucleus	71.6	71.6
Bra021734.1-P	Field mustard	nucleus	70.37	71.25
VIT_05s0102g00750.t01	Wine grape	nucleus	65.02	66.11
KRH29616	Soybean	nucleus	62.55	63.87
KRH24617	Soybean	nucleus	62.55	63.87
PGSC0003DMT400069498	Potato	nucleus	60.08	62.66
KRH23214	Soybean	nucleus	60.49	61.51
Solyc06g073180.2.1	Tomato	nucleus	58.85	61.37
GSMUA_Achr9P02360_001	Banana	cytosol	56.38	57.56
GSMUA_Achr6P21320_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	57.2	54.72
TraesCS6A01G216400.1	Wheat	extracellular	55.14	52.34
Zm00001d051018_P002	Maize	extracellular	54.32	52.17
TraesCS6D01G199200.1	Wheat	extracellular	54.73	51.15
TraesCS6B01G246500.1	Wheat	extracellular	54.73	51.15
EES07119	Sorghum	nucleus	54.73	50.57
TraesCS2A01G348900.1	Wheat	nucleus	51.03	48.82
TraesCS2D01G347300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	51.44	48.45
TraesCS2B01G367300.2	Wheat	nucleus	51.44	48.45
Os02t0606200-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole	53.09	47.6
TraesCS2A01G366100.2	Wheat	nucleus	50.62	46.77
EES12431	Sorghum	nucleus	51.03	46.27
Os04t0493000-01	Rice	cytosol	29.22	38.59
KRH10122	Soybean	nucleus	60.49	37.5
Bra010718.1-P	Field mustard	cytosol	23.05	31.11
Bra033588.1-P	Field mustard	cytosol	22.63	30.22
Bra031180.1-P	Field mustard	cytosol	23.05	29.79
Bra011879.1-P	Field mustard	nucleus	29.22	29.71
Bra010713.1-P	Field mustard	nucleus	29.22	29.46
Bra035051.1-P	Field mustard	nucleus	35.39	29.45
Bra008371.1-P	Field mustard	nucleus	34.98	29.21
Bra003640.1-P	Field mustard	nucleus	34.57	29.17
Bra008204.1-P	Field mustard	nucleus	33.74	27.15
Bra015835.1-P	Field mustard	nucleus	33.33	25.23
Bra003748.1-P	Field mustard	nucleus	32.92	25.08

Protein Annotations

EnsemblPlants:Bra015469.1	EnsemblPlants:Bra015469.1-P	EnsemblPlantsGene:Bra015469	Gene3D:3.30.40.200	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31832	PANTHER:PTHR31832:SF8	PFAM:PF00643	PFscan:PS50119	SEG:seg	SMART:SM00336
UniParc:UPI0002545313	UniProt:M4DG46	MapMan:15.5.1.1	:	:	:

Description

AT1G06040 (E=6e-108) STO | STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding

Coordinates

chrA10:+:1588434..1589352

Molecular Weight (calculated)

27175.7 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.561

Length

243 amino acids

Sequence
(BLAST)

001: MKIQCDVCEN APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALSSSS CSKETDKNHQ SEPSNNQQKA KEIPSQQQPS SASPLPWAVD DFFHFSDPEF TDKKGQLDLG ELEWFSDMGF FSDQINQETL PAAQVPELSA
201: AHLGHVHSYR PMKSNASYKK PRLEIRVDDE DDEEEHFIVP DLG

Best Arabidopsis Sequence Match ( AT1G06040.1 )
(BLAST)

001: MKIQCDVCEK APATVICCAD EAALCPQCDI EIHAANKLAS KHQRLHLNSL STKFPRCDIC QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT
101: GIKVALTSTI CSKEIEKNQP EPSNNQQKAN QIPAKSTSQQ QQQPSSATPL PWAVDDFFHF SDIESTDKKG QLDLGAGELD WFSDMGFFGD QINDKALPAA
201: EVPELSVSHL GHVHSYKPMK SNVSHKKPRF ETRYDDDDEE HFIVPDLG

Arabidopsis Description

BBX24B-box zinc finger protein 24 [Source:UniProtKB/Swiss-Prot;Acc:Q96288]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.