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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000011.1-P
Bra000560.1-P
Bra001386.1-P
Bra002964.1-P
Bra003782.1-P
Bra005177.1-P
Bra005486.1-P
Bra005779.1-P
Bra005852.1-P
Bra009112.1-P
Bra009512.1-P
Bra012972.1-P
Bra013048.1-P
Bra015469.1-P
Bra015885.1-P
Bra017430.1-P
Bra020709.1-P
Bra021860.1-P
Bra022738.1-P
Bra028759.1-P
Bra029011.1-P
Bra029889.1-P
Bra030208.1-P
Bra030635.1-P
Bra031950.1-P
Bra032441.1-P
Bra034159.1-P
Bra036315.1-P
Bra037290.1-P
Bra037312.1-P
Bra037499.1-P
Bra039926.1-P
Bra040153.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G32230.1 Bra015469.1-P AT1G06040.1 11018516
AT1G32230.1 Bra030635.1-P AT1G06040.1 11018516
AT1G32230.1 Bra032441.1-P AT1G06040.1 11018516
AT1G32230.1 Bra015469.1-P AT1G06040.1 19548978
AT1G32230.1 Bra030635.1-P AT1G06040.1 19548978
AT1G32230.1 Bra032441.1-P AT1G06040.1 19548978
AT1G32230.1 Bra003782.1-P AT1G74890.1 19548978
AT1G32230.1 Bra015885.1-P AT1G74890.1 19548978
AT1G32230.1 Bra017430.1-P AT2G01980.1 17023541
AT1G32230.1 Bra013048.1-P AT2G16770.1 19548978
AT1G32230.1 Bra037290.1-P AT2G16770.1 19548978
AT1G32230.1 Bra030208.1-P AT2G22760.1 19548978
AT1G32230.1 Bra039926.1-P AT2G22760.1 19548978
AT1G32230.1 Bra005486.1-P AT2G33550.1 19548978
AT1G32230.1 Bra021860.1-P AT2G33550.1 19548978
AT1G32230.1 Bra000011.1-P AT2G37630.1 19548978
AT1G32230.1 Bra005177.1-P AT2G37630.1 19548978
AT1G32230.1 Bra031950.1-P AT3G04060.1 19548978
AT1G32230.1 Bra040153.1-P AT3G04060.1 19548978
AT1G32230.1 Bra031950.1-P AT3G04060.1 25348421
AT1G32230.1 Bra040153.1-P AT3G04060.1 25348421
AT1G32230.1 Bra001386.1-P AT3G11020.1 19548978
AT1G32230.1 Bra029889.1-P AT3G11020.1 19548978
AT1G32230.1 Bra034159.1-P AT3G11020.1 19548978
AT1G32230.1 Bra000560.1-P AT4G00050.1 19548978
AT1G32230.1 Bra037312.1-P AT4G00050.1 19548978
AT1G32230.1 Bra036315.1-P AT4G01720.1 19548978
AT1G32230.1 Bra005779.1-P AT5G03760.1 19548978
AT1G32230.1 Bra009512.1-P AT5G03760.1 19548978
AT1G32230.1 Bra005852.1-P AT5G05410.1 19548978
AT1G32230.1 Bra009112.1-P AT5G05410.1 19548978
AT1G32230.1 Bra028759.1-P AT5G05410.1 19548978
AT1G32230.1 Bra020709.1-P AT5G48250.1 19548978
AT1G32230.1 Bra037499.1-P AT5G48250.1 19548978
AT1G32230.1 Bra002964.1-P AT5G54680.1 19548978
AT1G32230.1 Bra022738.1-P AT5G54680.1 19548978
AT1G32230.1 Bra029011.1-P AT5G54680.1 19548978
AT1G32230.1 Bra012972.1-P AT5G61270.1 19548978
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41739 Canola cytosol 91.04 92.36
CDY60257 Canola cytosol 43.55 74.31
Bra023252.1-P Field mustard nucleus 62.54 72.41
AT1G32230.1 Thale cress nucleus 71.15 67.4
Bra005336.1-P Field mustard cytosol, nucleus, plastid 46.06 49.05
Bra017317.1-P Field mustard nucleus 46.06 48.49
VIT_02s0012g01920.t01 Wine grape cytosol 36.02 37.71
KRH74370 Soybean mitochondrion, nucleus, plastid 37.63 36.02
KRH39574 Soybean mitochondrion, nucleus, plastid 37.28 35.68
VIT_02s0012g01930.t01 Wine grape nucleus 39.25 35.15
Solyc08g005270.2.1 Tomato nucleus 37.63 35.0
PGSC0003DMT400038368 Potato nucleus 35.66 33.79
GSMUA_Achr11P... Banana nucleus 29.57 31.73
GSMUA_Achr4P19000_001 Banana nucleus 22.76 30.31
PGSC0003DMT400043197 Potato nucleus 31.9 29.97
GSMUA_Achr8P14660_001 Banana cytosol, endoplasmic reticulum, nucleus 27.78 28.18
GSMUA_Achr5P14120_001 Banana nucleus 28.49 28.09
GSMUA_Achr2P18060_001 Banana nucleus 28.49 27.65
Bra016219.1-P Field mustard nucleus 15.05 27.63
KRH74373 Soybean mitochondrion 23.48 27.46
TraesCS4A01G321300.1 Wheat nucleus 27.06 26.54
TraesCS5B01G557500.2 Wheat nucleus 27.24 26.3
HORVU5Hr1G124010.1 Barley nucleus 27.06 26.08
Bra024609.1-P Field mustard cytoskeleton, cytosol, nucleus 14.34 25.97
TraesCS5D01G551800.3 Wheat nucleus 26.7 25.78
EER90487 Sorghum nucleus 26.34 25.65
Bra029254.1-P Field mustard cytosol 13.8 25.41
Os10t0577800-01 Rice nucleus 26.88 25.38
TraesCS1A01G195400.4 Wheat cytosol 26.7 25.17
Bra012380.1-P Field mustard cytosol 13.8 24.84
TraesCS1D01G199200.1 Wheat cytosol, nucleus, plastid 26.34 24.83
TraesCS1B01G210300.4 Wheat peroxisome 26.16 24.79
KXG38822 Sorghum nucleus 26.34 24.71
Bra010096.1-P Field mustard nucleus 13.8 24.6
HORVU1Hr1G050960.7 Barley nucleus 26.34 24.14
Os03t0854800-03 Rice nucleus 25.09 23.97
Zm00001d030110_P001 Maize mitochondrion, nucleus 25.09 23.49
Zm00001d014423_P002 Maize nucleus 25.27 23.0
Zm00001d012821_P003 Maize extracellular, vacuole 26.7 22.71
HORVU0Hr1G014460.1 Barley nucleus 22.76 22.01
Protein Annotations
Gene3D:3.90.228.10MapMan:35.1EnsemblPlantsGene:Bra035511EnsemblPlants:Bra035511.1EnsemblPlants:Bra035511.1-PGO:GO:0003674
GO:GO:0003824GO:GO:0003950GO:GO:0016740GO:GO:0016757InterPro:IPR004170InterPro:IPR012317
UniProt:M4F361PFAM:PF00644PFAM:PF12174PFscan:PS50918PFscan:PS51059PANTHER:PTHR32263
PANTHER:PTHR32263:SF4InterPro:Poly(ADP-ribose)pol_cat_domInterPro:RSTSUPFAM:SSF56399UniParc:UPI0002546370InterPro:WWE-dom
Description
AT1G32230 (E=1e-154) RCD1, CEO, CEO1, ATP8 | RCD1 (RADICAL-INDUCED CELL DEATH1); protein binding
Coordinates
chrA08:-:7983100..7985345
Molecular Weight (calculated)
62700.9 Da
IEP (calculated)
7.024
GRAVY (calculated)
-0.425
Length
558 amino acids
Sequence
(BLAST)
001: MEPRILKVLD SRCEDGFSKK RKRASYVTGV SCGKLQDELP PNPQTQVPDK RRKLEAEHKV SAYETRSGKS LVRYYSYFKK TGIAKRVMIY EEGEWSDLPH
101: HIICAIRNEL DEKRAAIEFE WCGHHFLLDF LHMHRLELET GAKTPLAWID IGGKCFFPEI YESAERNDCC NLNCVENSTQ CAPNQIKLHL EIDVNGGESP
201: RLNLEECSDE SGDRMGDVPT EDCCSRKIEA AVVNWNVTDA IAVSNIKHAG AEGLDKDAVK KMFAIGTSSL GHVAVLDVGR FSSEIAEARL GLFQKQVEIT
301: KKHRGDANVR YAWLPAKREA LSSVMMQGLG GAFIRKSIYG VGIHLTAADC PYFSARYCDI DENGVRYMVL CRVIMGNMEL LRGDKAQFFS GGEEYDNGVD
401: DVENPKNYIV WNMNMNTHVF PEYVVRFKLS DPINAEGNFV AKHDNSGVTL EVGPKDLPQL DLTRPEGGPR SANSVRSSMT KPKSPWMPFP TLFAAISHKV
501: AEKDKPFINA DYQQLREKRM TRAEFIRKLR GFVGDDLLRS TLTALENQAS LAGVKLSL
Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.