Factsheet for Bra002964.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023252.1-P
Bra035511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54680.1	Bra023252.1-P	AT1G32230.1	19548978
AT5G54680.1	Bra035511.1-P	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42475	Canola	nucleus	99.57	99.57
AT5G54680.1	Thale cress	nucleus	95.28	94.87
Bra022738.1-P	Field mustard	nucleus	92.7	91.91
Bra029011.1-P	Field mustard	nucleus	90.13	88.24
VIT_19s0014g05100.t01	Wine grape	nucleus	71.67	70.46
PGSC0003DMT400049592	Potato	nucleus	69.53	69.53
KRH55616	Soybean	cytosol, nucleus, plastid	69.96	69.07
KRH27110	Soybean	nucleus	68.67	68.67
KRH22229	Soybean	nucleus	68.67	68.38
Solyc07g064040.2.1	Tomato	nucleus	67.81	67.81
Solyc10g006510.2.1	Tomato	nucleus	66.09	66.67
KRH25888	Soybean	cytosol, nucleus, plastid	67.38	66.53
PGSC0003DMT400037405	Potato	nucleus	65.24	65.8
Bra030459.1-P	Field mustard	nucleus	61.37	63.56
Bra023751.1-P	Field mustard	nucleus	28.76	42.95
Bra011658.1-P	Field mustard	cytosol	12.45	34.52
Bra041033.1-P	Field mustard	nucleus	41.2	33.68
Bra014923.1-P	Field mustard	nucleus	40.77	32.76
Bra017745.1-P	Field mustard	nucleus	21.89	20.82

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra002964	EnsemblPlants:Bra002964.1	EnsemblPlants:Bra002964.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4CFI2	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025440B9	InterPro:bHLH_dom	SEG:seg

Description

AT5G54680 (E=2e-097) ILR3 | ILR3 (iaa-leucine resistant3); DNA binding / transcription factor

Coordinates

chrA10:+:6412794..6414296

Molecular Weight (calculated)

25517.4 Da

IEP (calculated)

9.128

GRAVY (calculated)

-0.676

Length

233 amino acids

Sequence
(BLAST)

001: MVSPENANWI SELIDAEYGS FTIQGPGFSW PLHQQPIGVS SLGVDGSAGN SEATKEPGSK KRARCESSSA TSSKACREKQ RRDRLNDKFM ELGAILEPGN
101: PPKTDKAAIL VDAVRMVTQL RGEAQKLKDS NSSLQDKIKE LKTEKNELRD EKQRLKTEKE KLEQQLKAMN APPQPSFFPA PPMMPTAFAS AQGQAPGNKM
201: VPVISYPGVA MWQFMPPASV DTSQDHVLRP PVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.