Factsheet for Bra030459.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71937	Canola	cytosol, nucleus	96.44	99.09
AT1G51070.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	87.56	67.47
PGSC0003DMT400049592	Potato	nucleus	66.22	63.95
VIT_19s0014g05100.t01	Wine grape	nucleus	66.67	63.29
KRH22229	Soybean	nucleus	65.78	63.25
KRH55616	Soybean	cytosol, nucleus, plastid	66.22	63.14
KRH25888	Soybean	cytosol, nucleus, plastid	65.78	62.71
Bra022738.1-P	Field mustard	nucleus	64.89	62.13
Solyc07g064040.2.1	Tomato	nucleus	64.0	61.8
KRH27110	Soybean	nucleus	63.56	61.37
Bra002964.1-P	Field mustard	nucleus	63.56	61.37
Solyc10g006510.2.1	Tomato	nucleus	62.22	60.61
PGSC0003DMT400037405	Potato	nucleus	61.33	59.74
Bra029011.1-P	Field mustard	nucleus	62.22	58.82
Bra011658.1-P	Field mustard	cytosol	15.56	41.67
Bra023751.1-P	Field mustard	nucleus	27.56	39.74
Bra041033.1-P	Field mustard	nucleus	43.11	34.04
Bra014923.1-P	Field mustard	nucleus	39.56	30.69
Bra017745.1-P	Field mustard	nucleus	23.11	21.22

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra030459	EnsemblPlants:Bra030459.1	EnsemblPlants:Bra030459.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983
GO:GO:0055072	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4ENT9	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002547ADC
InterPro:bHLH_dom	:	:	:	:	:

Description

AT1G51070 (E=5e-108) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA05:-:11495867..11497038

Molecular Weight (calculated)

25346.0 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.740

Length

225 amino acids

Sequence
(BLAST)

001: MVFPENTNWL SDYPLLIDGV FSHHSPTFPW QIDGSATTVS VEEVDGFLCD SDVIKEPGSK KRVKSESNAG PSSKACREKQ RRDKLNEKFT ELSSVLEPGR
101: APKTDKVAII NDAIRMVNQA RDEAQRLKDL NSNLQEKIKE LKDEKNELRD EKQKLKTEKD RIEQQLKAIN TQPCFLPNPP TLSQAQAPGS KLVPFTTYPG
201: FAMWQFMPPA AVDTSQDHVL RPPVA

Best Arabidopsis Sequence Match ( AT1G51070.1 )
(BLAST)

001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA

Arabidopsis Description

bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.