CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030459.1-P	Field mustard	nucleus	99.09	96.44
CDY35576	Canola	nucleus	95.43	91.67
AT1G51070.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	87.67	65.75
VIT_19s0014g05100.t01	Wine grape	nucleus	67.58	62.45
KRH55616	Soybean	cytosol, nucleus, plastid	67.12	62.29
PGSC0003DMT400049592	Potato	nucleus	66.21	62.23
KRH22229	Soybean	nucleus	66.21	61.97
KRH25888	Soybean	cytosol, nucleus, plastid	66.67	61.86
CDY28758	Canola	nucleus	65.3	60.85
CDY41004	Canola	nucleus	65.3	60.85
Solyc07g064040.2.1	Tomato	nucleus	64.38	60.52
KRH27110	Soybean	nucleus	63.93	60.09
CDY47456	Canola	nucleus	63.93	60.09
CDY42475	Canola	nucleus	63.93	60.09
CDY43028	Canola	nucleus	63.47	58.4
CDY43809	Canola	nucleus	63.47	58.4
PGSC0003DMT400037405	Potato	nucleus	61.19	58.01
Solyc10g006510.2.1	Tomato	nucleus	61.19	58.01
CDY49420	Canola	nucleus	42.92	33.69
CDY12770	Canola	nucleus	43.38	33.45
CDX77539	Canola	nucleus	40.18	30.34
CDX85069	Canola	nucleus	40.18	28.76
CDY08983	Canola	nucleus	38.81	28.72
CDY35510	Canola	nucleus	37.44	27.89
CDX72574	Canola	nucleus	23.29	20.82
CDY47051	Canola	nucleus	21.92	19.59
CDY68426	Canola	nucleus	20.09	17.32
CDY42214	Canola	mitochondrion, nucleus	25.57	16.77
CDY33424	Canola	nucleus	27.4	16.44

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	GO:A0A078K1Y5	UniProt:A0A078K1Y5	EnsemblPlants:CDY71937
ProteinID:CDY71937	ProteinID:CDY71937.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00022655001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEEC08
InterPro:bHLH_dom	:	:	:	:	:

Description

BnaA05g35780DBnaA05g35780D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K1Y5]

Coordinates

chrLK048208:-:967..2376

Molecular Weight (calculated)

24628.1 Da

IEP (calculated)

7.442

GRAVY (calculated)

-0.760

Length

219 amino acids

Sequence
(BLAST)

001: TNWLSDYPLL IDGVFSHHSP TFPWQIDGSA TTVSVEEVDG FLCDSDVIKE PGSKKRVKSE SNAGPSSKAC REKQRRDKLN DKFTELSSIL EPGRAPKTDK
101: VAIINDAIRM VNQARDEAQR LKDLNSNLQE KIKELKDEKN ELRDEKQKLK TEKDRIEQQL KAINTQPCFL PNPPTLSQAQ APGSKLVPFT TYPGFAMWQF
201: MPPAAVDTSQ DHVLRPPVA

Best Arabidopsis Sequence Match ( AT1G51070.1 )
(BLAST)

001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA

Arabidopsis Description

bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.