CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71937	Canola	cytosol, nucleus	91.67	95.43
AT1G51070.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	86.84	67.81
PGSC0003DMT400049592	Potato	nucleus	64.04	62.66
VIT_19s0014g05100.t01	Wine grape	nucleus	64.91	62.45
KRH22229	Soybean	nucleus	64.04	62.39
KRH55616	Soybean	cytosol, nucleus, plastid	64.47	62.29
KRH25888	Soybean	cytosol, nucleus, plastid	64.04	61.86
CDY41004	Canola	nucleus	63.16	61.28
CDY42475	Canola	nucleus	62.28	60.94
CDY47456	Canola	nucleus	62.28	60.94
CDY28758	Canola	nucleus	62.72	60.85
KRH27110	Soybean	nucleus	61.84	60.52
Solyc07g064040.2.1	Tomato	nucleus	61.84	60.52
CDY43028	Canola	nucleus	61.4	58.82
Solyc10g006510.2.1	Tomato	nucleus	59.21	58.44
PGSC0003DMT400037405	Potato	nucleus	59.21	58.44
CDY43809	Canola	nucleus	60.53	57.98
CDY49420	Canola	nucleus	41.23	33.69
CDY12770	Canola	nucleus	41.67	33.45
CDX77539	Canola	nucleus	39.04	30.69
CDX85069	Canola	nucleus	39.91	29.74
CDY08983	Canola	nucleus	37.72	29.05
CDY35510	Canola	nucleus	36.4	28.23
CDX72574	Canola	nucleus	23.25	21.63
CDY47051	Canola	nucleus	21.49	20.0
CDY68426	Canola	nucleus	20.18	18.11
CDY42214	Canola	mitochondrion, nucleus	25.88	17.66
CDY33424	Canola	nucleus	27.19	16.99

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	GO:A0A078HCZ0	UniProt:A0A078HCZ0	EnsemblPlants:CDY35576
ProteinID:CDY35576	ProteinID:CDY35576.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00058895001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EE3F44
InterPro:bHLH_dom	:	:	:	:	:

Description

BnaC05g27050DBnaC05g27050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCZ0]

Coordinates

chrLK032355:-:195052..196807

Molecular Weight (calculated)

25705.5 Da

IEP (calculated)

6.553

GRAVY (calculated)

-0.725

Length

228 amino acids

Sequence
(BLAST)

001: MVFPENTNWL SDYPLIDGVF SHQSPTFPWQ IDGSATVTVE EVDGFLCDSD VIKEPGSKKR VKSESYAGPS SKASREKQRR DKLNDKFTEL SSILEPGRAP
101: KTDKVAIIND VIRMVNQARD EAQRLKDLNS SLQEKIKELK DEKNELRDEK QKLKIEKDRI EQQLKAINTQ PLPAQPCFLP NPPTLSQAQA PGSKLVPYTT
201: YPGFAMWQFM PPAAVDTSQD HVLRPPVA

Best Arabidopsis Sequence Match ( AT1G51070.1 )
(BLAST)

001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA

Arabidopsis Description

bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.