CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G19860.2	Thale cress	nucleus	87.43	86.65
CDY33424	Canola	nucleus	89.82	82.19
CDX72574	Canola	nucleus	31.14	42.45
CDY47051	Canola	nucleus	30.24	41.22
CDY68426	Canola	nucleus	31.14	40.94
CDY42475	Canola	nucleus	20.96	30.04
CDY43028	Canola	nucleus	21.26	29.83
CDY41004	Canola	nucleus	20.66	29.36
CDY47456	Canola	nucleus	20.36	29.18
CDY28758	Canola	nucleus	20.36	28.94
CDY43809	Canola	nucleus	20.36	28.57
CDY35576	Canola	nucleus	17.66	25.88
CDY71937	Canola	cytosol, nucleus	16.77	25.57
CDY49420	Canola	nucleus	19.46	23.3
CDY35510	Canola	nucleus	20.06	22.79
CDY12770	Canola	nucleus	19.16	22.54
CDX77539	Canola	nucleus	19.46	22.41
CDY08983	Canola	nucleus	19.76	22.3
CDX85069	Canola	nucleus	19.16	20.91

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	GO:A0A078HXZ0	UniProt:A0A078HXZ0	EnsemblPlants:CDY42214
ProteinID:CDY42214	ProteinID:CDY42214.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00074427001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF59	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EEA589
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BnaA01g25810DBnaA01g25810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXZ0]

Coordinates

chrLK032518:+:128704..132201

Molecular Weight (calculated)

37650.4 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.967

Length

334 amino acids

Sequence
(BLAST)

001: MYLIKLIWMM QSDQRAGLAR TNNQESFFVE PCLHLNRISP PPSPSILPAE FMDVSARKSQ KAGREKLRRE KLNEHFVELG NVLDPERPKN DKATILTDTL
101: QLLKELTSEV NKLKSEYTAL TDESRELTQE KNDLREEKTS LKSDIENLNL QYQQRLRSMS PWGAAMDHTV MMAPPPSFPY PMPMAMPPGS IPMHHPPMPS
201: YTYFGNQNPS MMPAPYMPYM PPNTVVEQQS VHIPQNNRSR EPRAKVSRES RSDKAEDSND VATQLELKTP GSTSDKDTSQ RPEKSKRCKR NSNNNNNSVE
301: ESSHSSKCSS SPSVRDNTSS SSVSGGGLKP DDAK

Best Arabidopsis Sequence Match ( AT3G19860.2 )
(BLAST)

001: MGIRENGIML VSRERERARR LENRESIFAE PPCLLLAHRI SPSPSILPAE EEVMDVSARK SQKAGREKLR REKLNEHFVE LGNVLDPERP KNDKATILTD
101: TVQLLKELTS EVNKLKSEYT ALTDESRELT QEKNDLREEK TSLKSDIENL NLQYQQRLRS MSPWGAAMDH TVMMAPPPSF PYPMPIAMPP GSIPMHPSMP
201: SYTYFGNQNP SMIPAPCPTY MPYMPPNTVV EQQSVHIPQN PGNRSREPRA KVSRESRSEK AEDSNEVATQ LELKTPGSTS DKDTLQRPEK TKRCKRNNNN
301: NSIEESSHSS KCSSSPSVRD HSSSSSVAGG QKPDDAK

Arabidopsis Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.