Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY49420 | Canola | nucleus | 95.07 | 96.77 |
AT4G14410.1 | Thale cress | nucleus | 80.63 | 80.92 |
CDX85069 | Canola | nucleus | 64.44 | 59.8 |
CDX77539 | Canola | nucleus | 60.21 | 58.97 |
CDY08983 | Canola | nucleus | 59.86 | 57.43 |
CDY35510 | Canola | nucleus | 59.15 | 57.14 |
KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 44.01 | 56.82 |
VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 42.96 | 56.22 |
KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 42.96 | 55.96 |
Solyc09g089870.2.1 | Tomato | nucleus | 44.01 | 55.31 |
PGSC0003DMT400044234 | Potato | nucleus | 42.61 | 53.54 |
GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 22.89 | 45.45 |
GSMUA_Achr10P... | Banana | cytosol | 22.89 | 44.83 |
CDY71937 | Canola | cytosol, nucleus | 33.45 | 43.38 |
CDY28758 | Canola | nucleus | 35.21 | 42.55 |
CDY41004 | Canola | nucleus | 34.51 | 41.7 |
CDY35576 | Canola | nucleus | 33.45 | 41.67 |
CDY47456 | Canola | nucleus | 33.8 | 41.2 |
CDY42475 | Canola | nucleus | 33.8 | 41.2 |
GSMUA_Achr10P... | Banana | plastid | 26.06 | 40.66 |
CDY43809 | Canola | nucleus | 33.8 | 40.34 |
CDY43028 | Canola | nucleus | 33.45 | 39.92 |
Os05t0455400-01 | Rice | cytosol | 19.72 | 37.84 |
EES18337 | Sorghum | nucleus | 32.04 | 37.76 |
GSMUA_Achr2P16550_001 | Banana | cytosol | 29.93 | 36.96 |
HORVU1Hr1G072810.2 | Barley | nucleus | 30.28 | 36.13 |
TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 30.28 | 35.83 |
TraesCS1B01G290500.1 | Wheat | cytosol | 30.28 | 35.54 |
TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.93 | 35.27 |
Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 32.04 | 31.93 |
CDX72574 | Canola | nucleus | 17.96 | 20.82 |
CDY47051 | Canola | nucleus | 16.9 | 19.59 |
CDY42214 | Canola | mitochondrion, nucleus | 22.54 | 19.16 |
CDY68426 | Canola | nucleus | 16.55 | 18.5 |
CDY33424 | Canola | nucleus | 22.54 | 17.53 |
Protein Annotations
MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | GO:A0A078FEH2 | UniProt:A0A078FEH2 | EnsemblPlants:CDY12770 |
ProteinID:CDY12770 | ProteinID:CDY12770.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00070363001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF72 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE6EB7 |
InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC04g28710DBnaC04g28710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEH2]
Coordinates
chrLK032026:+:789967..791633
Molecular Weight (calculated)
32049.3 Da
IEP (calculated)
4.472
GRAVY (calculated)
-0.852
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPSLDDEDF VSDFFCFDQR NGAELDDYTQ FGVDLQPDQA GTFPDFGSYG VNLQSDPEQV FSIGDLTSYG GVLTQEPGQF RNFGGPNDCG TVQEDEVVVN
101: SSSSGGAVKQ EQEHVDEECS RKRGRTGSCV RPGGTKACRE RLRREKLNDK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN QLRDEAHELE ETNQKLLEEI
201: KSLKAEKNEL REEKQALKVE KEKTEQQLKS MMVPSTGFMP QIPAPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA
101: SSSSGGAVKQ EQEHVDEECS RKRGRTGSCV RPGGTKACRE RLRREKLNDK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN QLRDEAHELE ETNQKLLEEI
201: KSLKAEKNEL REEKQALKVE KEKTEQQLKS MMVPSTGFMP QIPAPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA
001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
Arabidopsis Description
BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.