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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49420 Canola nucleus 95.07 96.77
AT4G14410.1 Thale cress nucleus 80.63 80.92
CDX85069 Canola nucleus 64.44 59.8
CDX77539 Canola nucleus 60.21 58.97
CDY08983 Canola nucleus 59.86 57.43
CDY35510 Canola nucleus 59.15 57.14
KRG90395 Soybean cytosol, mitochondrion, nucleus 44.01 56.82
VIT_05s0049g00460.t01 Wine grape cytosol, nucleus, plasma membrane 42.96 56.22
KRH31712 Soybean cytosol, mitochondrion, nucleus 42.96 55.96
Solyc09g089870.2.1 Tomato nucleus 44.01 55.31
PGSC0003DMT400044234 Potato nucleus 42.61 53.54
GSMUA_Achr7P10830_001 Banana cytosol, nucleus, plastid 22.89 45.45
GSMUA_Achr10P... Banana cytosol 22.89 44.83
CDY71937 Canola cytosol, nucleus 33.45 43.38
CDY28758 Canola nucleus 35.21 42.55
CDY41004 Canola nucleus 34.51 41.7
CDY35576 Canola nucleus 33.45 41.67
CDY47456 Canola nucleus 33.8 41.2
CDY42475 Canola nucleus 33.8 41.2
GSMUA_Achr10P... Banana plastid 26.06 40.66
CDY43809 Canola nucleus 33.8 40.34
CDY43028 Canola nucleus 33.45 39.92
Os05t0455400-01 Rice cytosol 19.72 37.84
EES18337 Sorghum nucleus 32.04 37.76
GSMUA_Achr2P16550_001 Banana cytosol 29.93 36.96
HORVU1Hr1G072810.2 Barley nucleus 30.28 36.13
TraesCS1A01G281300.1 Wheat cytosol, mitochondrion, nucleus 30.28 35.83
TraesCS1B01G290500.1 Wheat cytosol 30.28 35.54
TraesCS1D01G280600.1 Wheat cytosol, mitochondrion, nucleus 29.93 35.27
Zm00001d038357_P001 Maize cytosol, nucleus, plastid 32.04 31.93
CDX72574 Canola nucleus 17.96 20.82
CDY47051 Canola nucleus 16.9 19.59
CDY42214 Canola mitochondrion, nucleus 22.54 19.16
CDY68426 Canola nucleus 16.55 18.5
CDY33424 Canola nucleus 22.54 17.53
Protein Annotations
MapMan:15.5.32MapMan:25.4.1.2Gene3D:4.10.280.10GO:A0A078FEH2UniProt:A0A078FEH2EnsemblPlants:CDY12770
ProteinID:CDY12770ProteinID:CDY12770.1ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00070363001InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638PFAM:PF00010
PFscan:PS50888PANTHER:PTHR23042PANTHER:PTHR23042:SF72SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EE6EB7
InterPro:bHLH_domSEG:seg::::
Description
BnaC04g28710DBnaC04g28710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEH2]
Coordinates
chrLK032026:+:789967..791633
Molecular Weight (calculated)
32049.3 Da
IEP (calculated)
4.472
GRAVY (calculated)
-0.852
Length
284 amino acids
Sequence
(BLAST)
001: MYPSLDDEDF VSDFFCFDQR NGAELDDYTQ FGVDLQPDQA GTFPDFGSYG VNLQSDPEQV FSIGDLTSYG GVLTQEPGQF RNFGGPNDCG TVQEDEVVVN
101: SSSSGGAVKQ EQEHVDEECS RKRGRTGSCV RPGGTKACRE RLRREKLNDK FMDLSSVLEP GRTPKTDKPA ILDDAIRVLN QLRDEAHELE ETNQKLLEEI
201: KSLKAEKNEL REEKQALKVE KEKTEQQLKS MMVPSTGFMP QIPAPFNQNK MAVYPSYGYM PMWHYLPQSV RDTSRDQELR PPAA
Best Arabidopsis Sequence Match ( AT4G14410.1 )
(BLAST)
001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA
Arabidopsis Description
BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.