Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G54680.1 | CDY22597 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY41739 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY43007 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY60257 | AT1G32230.1 | 19548978 |
| AT5G54680.1 | CDY67026 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022738.1-P | Field mustard | nucleus | 99.57 | 99.57 |
| CDY41004 | Canola | nucleus | 97.45 | 97.45 |
| AT5G54680.1 | Thale cress | nucleus | 94.47 | 94.87 |
| CDY42475 | Canola | nucleus | 92.77 | 93.56 |
| CDY47456 | Canola | nucleus | 91.91 | 92.7 |
| CDY43809 | Canola | nucleus | 89.79 | 88.66 |
| CDY43028 | Canola | nucleus | 89.36 | 88.24 |
| VIT_19s0014g05100.t01 | Wine grape | nucleus | 72.77 | 72.15 |
| KRH55616 | Soybean | cytosol, nucleus, plastid | 72.34 | 72.03 |
| PGSC0003DMT400049592 | Potato | nucleus | 70.21 | 70.82 |
| KRH25888 | Soybean | cytosol, nucleus, plastid | 70.21 | 69.92 |
| Solyc07g064040.2.1 | Tomato | nucleus | 68.51 | 69.1 |
| KRH27110 | Soybean | nucleus | 68.51 | 69.1 |
| KRH22229 | Soybean | nucleus | 68.51 | 68.8 |
| Solyc10g006510.2.1 | Tomato | nucleus | 66.81 | 67.97 |
| PGSC0003DMT400037405 | Potato | nucleus | 65.96 | 67.1 |
| CDY71937 | Canola | cytosol, nucleus | 60.85 | 65.3 |
| CDY35576 | Canola | nucleus | 60.85 | 62.72 |
| CDY49420 | Canola | nucleus | 42.55 | 35.84 |
| CDY12770 | Canola | nucleus | 42.55 | 35.21 |
| CDX77539 | Canola | nucleus | 41.7 | 33.79 |
| CDY08983 | Canola | nucleus | 40.43 | 32.09 |
| CDX85069 | Canola | nucleus | 41.7 | 32.03 |
| CDY35510 | Canola | nucleus | 39.15 | 31.29 |
| CDX72574 | Canola | nucleus | 22.13 | 21.22 |
| CDY42214 | Canola | mitochondrion, nucleus | 28.94 | 20.36 |
| CDY47051 | Canola | nucleus | 20.85 | 20.0 |
| CDY68426 | Canola | nucleus | 21.28 | 19.68 |
| CDY33424 | Canola | nucleus | 29.36 | 18.9 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | GO:A0A078GVS8 | UniProt:A0A078GVS8 | EnsemblPlants:CDY28758 |
| ProteinID:CDY28758 | ProteinID:CDY28758.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00041401001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001B37421 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA02g09500DBnaA02g09500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVS8]
Coordinates
chrLK032226:-:50993..53062
Molecular Weight (calculated)
25641.4 Da
IEP (calculated)
9.128
GRAVY (calculated)
-0.657
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSPENANWI SDLIDADYGG FTIQGPGFSW PVHQPLAVSS NSSAGVDGSA GNSEASKEPG SKKRARCESS SATSSKACRE KQRRDRLNDK FMELSVILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DTNSGLQEKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAAQGQAPGN
201: KMVPFISYPG VAMWQFMPPA SVDTSQDHVL RPPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DTNSGLQEKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAAQGQAPGN
201: KMVPFISYPG VAMWQFMPPA SVDTSQDHVL RPPVA
001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA
Arabidopsis Description
ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.