Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77539 | Canola | nucleus | 78.76 | 83.1 |
| CDY08983 | Canola | nucleus | 74.84 | 77.36 |
| CDY35510 | Canola | nucleus | 73.86 | 76.87 |
| AT3G23210.1 | Thale cress | nucleus | 75.16 | 71.88 |
| CDY12770 | Canola | nucleus | 59.8 | 64.44 |
| CDY49420 | Canola | nucleus | 58.5 | 64.16 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 36.6 | 50.91 |
| Solyc09g089870.2.1 | Tomato | nucleus | 37.58 | 50.88 |
| PGSC0003DMT400044234 | Potato | nucleus | 37.25 | 50.44 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 34.97 | 49.31 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 34.97 | 49.08 |
| GSMUA_Achr10P... | Banana | cytosol | 19.93 | 42.07 |
| CDY28758 | Canola | nucleus | 32.03 | 41.7 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 19.28 | 41.26 |
| CDY41004 | Canola | nucleus | 31.37 | 40.85 |
| CDY42475 | Canola | nucleus | 31.05 | 40.77 |
| CDY71937 | Canola | cytosol, nucleus | 28.76 | 40.18 |
| CDY47456 | Canola | nucleus | 30.39 | 39.91 |
| CDY35576 | Canola | nucleus | 29.74 | 39.91 |
| CDY43809 | Canola | nucleus | 30.72 | 39.5 |
| CDY43028 | Canola | nucleus | 30.39 | 39.08 |
| Os05t0455400-01 | Rice | cytosol | 17.65 | 36.49 |
| GSMUA_Achr10P... | Banana | plastid | 21.24 | 35.71 |
| EES18337 | Sorghum | nucleus | 26.8 | 34.02 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 25.16 | 33.48 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 25.82 | 33.19 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 25.49 | 32.5 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 25.49 | 32.23 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 25.16 | 31.95 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 27.45 | 29.47 |
| CDX72574 | Canola | nucleus | 16.34 | 20.41 |
| CDY47051 | Canola | nucleus | 15.36 | 19.18 |
| CDY42214 | Canola | mitochondrion, nucleus | 20.91 | 19.16 |
| CDY68426 | Canola | nucleus | 15.69 | 18.9 |
| CDY33424 | Canola | nucleus | 20.91 | 17.53 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | GO:A0A078D9Y3 | EnsemblPlants:CDX85069 | ProteinID:CDX85069 |
| ProteinID:CDX85069.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00142534001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF72 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEA26E | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g08370D
Coordinates
chrLK031840:-:105799..107483
Molecular Weight (calculated)
34026.6 Da
IEP (calculated)
4.751
GRAVY (calculated)
-0.776
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MYQSNEDDDD FFAALCFDQS NGGEDPYAFI QTEQGNLFQD FGSSSGVNLQ PEQEQFGSFS GNLPQVCSFT GENNGLAAFG GHSIGFGSSQ LDLGTSSYSG
101: LLQQEPHQVC SFRGRNNDSV PLEINSSSSV GGVKEELEEE CSRKRGRTGP GTKASREKKR REMLNDKFMD LSSFLEPTRT PKTDKPAIID DAIRVVNQLR
201: GEAHELKETN QKLLEEIKSL KAEKNELREE KLVLKADKEK MEQQLKSMTT VPSPGFLPSH PAAFHQNKMA VYASYGYYPN MPMMPYLLPP SQRDTSQDQQ
301: NCSFAA
101: LLQQEPHQVC SFRGRNNDSV PLEINSSSSV GGVKEELEEE CSRKRGRTGP GTKASREKKR REMLNDKFMD LSSFLEPTRT PKTDKPAIID DAIRVVNQLR
201: GEAHELKETN QKLLEEIKSL KAEKNELREE KLVLKADKEK MEQQLKSMTT VPSPGFLPSH PAAFHQNKMA VYASYGYYPN MPMMPYLLPP SQRDTSQDQQ
301: NCSFAA
001: MYPSIEDDDD LLAALCFDQS NGVEDPYGYM QTNEDNIFQD FGSCGVNLMQ PQQEQFDSFN GNLEQVCSSF RGGNNGVVYS SSIGSAQLDL AASFSGVLQQ
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA
Arabidopsis Description
BHLH34Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.