Factsheet for VIT_05s0049g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90395	Soybean	cytosol, mitochondrion, nucleus	59.45	58.64
KRH31712	Soybean	cytosol, mitochondrion, nucleus	58.53	58.26
Solyc09g089870.2.1	Tomato	nucleus	55.76	53.54
GSMUA_Achr10P...	Banana	cytosol	35.48	53.1
VIT_14s0081g00720.t01	Wine grape	nucleus	52.53	52.78
PGSC0003DMT400044234	Potato	nucleus	54.84	52.65
Bra023751.1-P	Field mustard	nucleus	37.79	52.56
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	33.64	51.05
VIT_12s0059g02650.t01	Wine grape	nucleus	50.23	45.42
GSMUA_Achr10P...	Banana	plastid	37.79	45.05
AT4G14410.1	Thale cress	nucleus	56.68	43.46
CDY49420	Canola	nucleus	55.76	43.37
VIT_19s0014g05100.t01	Wine grape	nucleus	47.0	43.04
CDY12770	Canola	nucleus	56.22	42.96
Bra041033.1-P	Field mustard	nucleus	55.76	42.46
GSMUA_Achr2P16550_001	Banana	cytosol	44.7	42.17
Os05t0455400-01	Rice	cytosol	28.11	41.22
EES18337	Sorghum	nucleus	45.16	40.66
HORVU1Hr1G072810.2	Barley	nucleus	43.78	39.92
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	43.78	39.58
TraesCS1B01G290500.1	Wheat	cytosol	43.78	39.26
VIT_00s0532g00050.t01	Wine grape	nucleus	47.47	39.16
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	43.32	39.0
CDX77539	Canola	nucleus	49.77	37.24
Bra014923.1-P	Field mustard	nucleus	49.77	37.24
CDY08983	Canola	nucleus	49.31	36.15
CDY35510	Canola	nucleus	48.39	35.71
CDX85069	Canola	nucleus	49.31	34.97
AT3G23210.1	Thale cress	nucleus	51.15	34.69
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	45.16	34.39
VIT_04s0023g03430.t01	Wine grape	nucleus	28.57	19.02
VIT_03s0038g01790.t01	Wine grape	nucleus	27.65	18.24

Protein Annotations

EntrezGene:100264856	wikigene:100264856	MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	ProteinID:CCB48542
ProteinID:CCB48542.1	ncoils:Coil	UniProt:F6H8K7	EMBL:FN595496	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EntrezGene:LOC100264856
wikigene:LOC100264856	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF72	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000210841A	ArrayExpress:VIT_05s0049g00460	EnsemblPlantsGene:VIT_05s0049g00460	EnsemblPlants:VIT_05s0049g00460.t01	RefSeq:XP_002280987
RefSeq:XP_002280987.2	RefSeq:XP_010650065.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:7500113..7506717

Molecular Weight (calculated)

24475.6 Da

IEP (calculated)

5.425

GRAVY (calculated)

-0.797

Length

217 amino acids

Sequence
(BLAST)

001: MDSFDDDTWD FLNHKLIDDV TSNDLSWIND GAGVDIDLSR ICAASQENEG RQKRGRNDSS TRPGTKACRE KLRRERLNDR FLDLSSILEP GKSAKTDKLA
101: ILGDAIRVLN QLRNEAKDLE DANEKLQEEI RSLKAEKNEL REEKLLLKAD KERIEQQMKA ISAPAAGFWP TYPAATHHTG ANKSAVFPSY GLFPMWQYIP
201: SSALDTSHDH ELRPPAA

Best Arabidopsis Sequence Match ( AT4G14410.2 )
(BLAST)

001: MDVNLFGHDD SCSNGAELDD YTQFGVNLQT DQEDTFPDFV SYGVNLQQEP DEVFSIGASQ LDLSSYNGVL SLEPEQVGQQ DCEVVQEEEV EINSGSSGGA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA

Arabidopsis Description

BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.