Factsheet for GSMUA_Achr10P00550_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	50.0	62.76
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	48.35	61.54
GSMUA_Achr2P16550_001	Banana	cytosol	59.34	46.96
Os05t0455400-01	Rice	cytosol	37.91	46.62
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	56.04	42.5
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	56.04	42.32
TraesCS1B01G290500.1	Wheat	cytosol	56.04	42.15
HORVU1Hr1G072810.2	Barley	nucleus	54.95	42.02
EES18337	Sorghum	nucleus	55.49	41.91
GSMUA_Achr10P...	Banana	cytosol	29.12	41.41
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	45.05	37.79
GSMUA_Achr4P05310_001	Banana	nucleus	46.15	36.68
GSMUA_Achr3P23080_001	Banana	nucleus	44.51	35.22
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	54.95	35.09
GSMUA_Achr8P33180_001	Banana	nucleus	43.41	34.96
KRH31712	Soybean	cytosol, mitochondrion, nucleus	41.76	34.86
KRG90395	Soybean	cytosol, mitochondrion, nucleus	41.76	34.55
GSMUA_Achr7P04180_001	Banana	nucleus	42.86	34.51
GSMUA_Achr4P05280_001	Banana	nucleus	43.41	34.5
VIT_14s0081g00720.t01	Wine grape	nucleus	40.11	33.8
Bra023751.1-P	Field mustard	nucleus	28.57	33.33
PGSC0003DMT400044234	Potato	nucleus	40.66	32.74
Solyc09g089870.2.1	Tomato	nucleus	40.66	32.74
GSMUA_Achr11P...	Banana	cytosol	29.67	29.51
CDY12770	Canola	nucleus	40.66	26.06
CDY49420	Canola	nucleus	39.56	25.81
AT4G14410.1	Thale cress	nucleus	40.11	25.8
Bra041033.1-P	Field mustard	nucleus	39.56	25.26
CDX77539	Canola	nucleus	36.81	23.1
Bra014923.1-P	Field mustard	nucleus	36.81	23.1
CDY08983	Canola	nucleus	37.36	22.97
AT3G23210.1	Thale cress	nucleus	40.11	22.81
CDY35510	Canola	nucleus	36.81	22.79
CDX85069	Canola	nucleus	35.71	21.24

Protein Annotations

EnsemblPlants:GSMUA_Achr10P00550_001	EnsemblPlants:GSMUA_Achr10T00550_001	EnsemblPlantsGene:GSMUA_Achr10G00550_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR23042	PANTHER:PTHR23042:SF72	PFAM:PF00010	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000294EA6B	UniProt:M0RE82	MapMan:15.5.32	MapMan:25.4.1.2	:

Description

Transcription factor ILR3 [Source:GMGC_GENE;Acc:GSMUA_Achr10G00550_001]

Coordinates

chr10:-:1141180..1142029

Molecular Weight (calculated)

20918.6 Da

IEP (calculated)

10.015

GRAVY (calculated)

-0.447

Length

182 amino acids

Sequence
(BLAST)

001: MFLFPICTTN YISIGKDIKN IQVFFLFRRA RVESSAAPRT KACREKLRRD RLNDRFRELC CVLDPGKPPK ADKLAVLRDA THLLIQLRVE AKKLKESNEA
101: LQDAIKNLKA EKSELRDEKT RLRCEKEQME QMLRGISFTG QSAAVPATND KTFAYMPICM WQWVPPAALD TSQDHVLRPP VA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.