Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 98.35 | 98.76 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 97.93 | 98.75 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 93.39 | 94.96 |
| EES18337 | Sorghum | nucleus | 85.12 | 85.48 |
| Os05t0455400-01 | Rice | cytosol | 48.35 | 79.05 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 82.23 | 69.82 |
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 33.88 | 57.34 |
| GSMUA_Achr10P... | Banana | cytosol | 34.3 | 57.24 |
| GSMUA_Achr10P... | Banana | plastid | 42.15 | 56.04 |
| GSMUA_Achr2P16550_001 | Banana | cytosol | 50.83 | 53.48 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 42.15 | 46.36 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 41.32 | 45.87 |
| TraesCS7B01G208000.1 | Wheat | nucleus | 44.21 | 44.58 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 39.26 | 43.78 |
| TraesCS2B01G240600.1 | Wheat | nucleus | 43.8 | 42.23 |
| Solyc09g089870.2.1 | Tomato | nucleus | 39.26 | 42.04 |
| PGSC0003DMT400044234 | Potato | nucleus | 38.84 | 41.59 |
| VIT_14s0081g00720.t01 | Wine grape | nucleus | 36.78 | 41.2 |
| TraesCS6B01G060700.2 | Wheat | nucleus | 41.74 | 40.73 |
| Bra023751.1-P | Field mustard | nucleus | 23.55 | 36.54 |
| CDY49420 | Canola | nucleus | 35.54 | 30.82 |
| AT4G14410.1 | Thale cress | nucleus | 35.95 | 30.74 |
| CDY12770 | Canola | nucleus | 35.54 | 30.28 |
| Bra041033.1-P | Field mustard | nucleus | 35.54 | 30.18 |
| AT3G23210.1 | Thale cress | nucleus | 36.36 | 27.5 |
| Bra014923.1-P | Field mustard | nucleus | 32.64 | 27.24 |
| CDX77539 | Canola | nucleus | 32.23 | 26.9 |
| CDY08983 | Canola | nucleus | 31.82 | 26.01 |
| CDY35510 | Canola | nucleus | 30.99 | 25.51 |
| CDX85069 | Canola | nucleus | 32.23 | 25.49 |
| TraesCS6B01G220300.1 | Wheat | nucleus | 23.14 | 18.79 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G290500.1 | EnsemblPlantsGene:TraesCS1B01G290500 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR23042 | PANTHER:PTHR23042:SF78 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | TIGR:cd00083 | MapMan:15.5.32 | MapMan:25.4.1.2 | : | : |
Description
No Description!
Coordinates
chr1B:+:507807295..507808901
Molecular Weight (calculated)
26178.9 Da
IEP (calculated)
8.076
GRAVY (calculated)
-0.515
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCGGVGHGG WLLDYGLVEE EIQASDFIYM VDDPPVSSVI LGFDAPRRED AAAAAQDNSG AKKRSRPESS AQPGTKACRE KLRRDRLNER FSELCAVLEP
101: GKPPKADKVA ILSDATRLLD QLRAEAQKLK ASNESLQDSI KSLKSEKSEL RDEKTKLKAE RERLEQMLKG VSAAAAAAPR QFVPHPAAAA APQFHPAAAY
201: AHAGKFVPAY AAGYPPPAAF WQWIPPTSLD TSKDPAHWPP VA
101: GKPPKADKVA ILSDATRLLD QLRAEAQKLK ASNESLQDSI KSLKSEKSEL RDEKTKLKAE RERLEQMLKG VSAAAAAAPR QFVPHPAAAA APQFHPAAAY
201: AHAGKFVPAY AAGYPPPAAF WQWIPPTSLD TSKDPAHWPP VA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.