Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P10830_001 | Banana | cytosol, nucleus, plastid | 47.39 | 76.22 |
| GSMUA_Achr10P... | Banana | cytosol | 47.83 | 75.86 |
| GSMUA_Achr10P... | Banana | plastid | 46.96 | 59.34 |
| HORVU1Hr1G072810.2 | Barley | nucleus | 54.35 | 52.52 |
| EES18337 | Sorghum | nucleus | 54.35 | 51.87 |
| TraesCS1A01G281300.1 | Wheat | cytosol, mitochondrion, nucleus | 53.48 | 51.25 |
| TraesCS1D01G280600.1 | Wheat | cytosol, mitochondrion, nucleus | 53.48 | 51.04 |
| TraesCS1B01G290500.1 | Wheat | cytosol | 53.48 | 50.83 |
| Os05t0455400-01 | Rice | cytosol | 29.13 | 45.27 |
| VIT_05s0049g00460.t01 | Wine grape | cytosol, nucleus, plasma membrane | 42.17 | 44.7 |
| GSMUA_Achr10P... | Banana | cytosol | 24.35 | 43.75 |
| Zm00001d038357_P001 | Maize | cytosol, nucleus, plastid | 53.04 | 42.81 |
| GSMUA_Achr4P05280_001 | Banana | nucleus | 41.74 | 41.92 |
| KRG90395 | Soybean | cytosol, mitochondrion, nucleus | 40.0 | 41.82 |
| KRH31712 | Soybean | cytosol, mitochondrion, nucleus | 39.57 | 41.74 |
| GSMUA_Achr8P33180_001 | Banana | nucleus | 40.0 | 40.71 |
| GSMUA_Achr4P05310_001 | Banana | nucleus | 40.43 | 40.61 |
| GSMUA_Achr3P23080_001 | Banana | nucleus | 40.0 | 40.0 |
| Solyc09g089870.2.1 | Tomato | nucleus | 39.13 | 39.82 |
| VIT_14s0081g00720.t01 | Wine grape | nucleus | 36.96 | 39.35 |
| PGSC0003DMT400044234 | Potato | nucleus | 38.26 | 38.94 |
| GSMUA_Achr7P04180_001 | Banana | nucleus | 36.09 | 36.73 |
| GSMUA_Achr11P... | Banana | cytosol | 29.13 | 36.61 |
| Bra023751.1-P | Field mustard | nucleus | 23.48 | 34.62 |
| CDY49420 | Canola | nucleus | 36.52 | 30.11 |
| CDY12770 | Canola | nucleus | 36.96 | 29.93 |
| AT4G14410.1 | Thale cress | nucleus | 36.52 | 29.68 |
| Bra041033.1-P | Field mustard | nucleus | 36.52 | 29.47 |
| Bra014923.1-P | Field mustard | nucleus | 34.35 | 27.24 |
| CDX77539 | Canola | nucleus | 33.91 | 26.9 |
| CDY08983 | Canola | nucleus | 33.48 | 26.01 |
| AT3G23210.1 | Thale cress | nucleus | 36.09 | 25.94 |
| CDY35510 | Canola | nucleus | 33.04 | 25.85 |
| CDX85069 | Canola | nucleus | 33.48 | 25.16 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.2 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr2G16550_001 | EnsemblPlants:GSMUA_Achr2P16550_001 | EnsemblPlants:GSMUA_Achr2T16550_001 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M0S8J6 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR23042 |
| PANTHER:PTHR23042:SF78 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002958DE3 | InterPro:bHLH_dom | SEG:seg |
Description
basic helix-loop-helix DND-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G16550_001]
Coordinates
chr2:-:17378775..17381389
Molecular Weight (calculated)
25620.5 Da
IEP (calculated)
9.235
GRAVY (calculated)
-0.633
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSNPNAGGG WIINYGGFME DVHASDFIWA PQVVDDPSAS SAMLGFDALR KEDNRPNNGN LRKRPRAESC AVPGTKACRE KIRRDRLNCR FTELCSILDP
101: GKPPKTDKFA ILGDATRLLN HLRNEAKKTK ESNEALHDAI KNMKAEKVEL RDERTRLKAE KARIEEMLKV ISTTPQFITQ PAAATFHETS AAAHSKTIPY
201: PNYLPMGMWQ WTAPAAIDTS QDHVLRPPVA
101: GKPPKTDKFA ILGDATRLLN HLRNEAKKTK ESNEALHDAI KNMKAEKVEL RDERTRLKAE KARIEEMLKV ISTTPQFITQ PAAATFHETS AAAHSKTIPY
201: PNYLPMGMWQ WTAPAAIDTS QDHVLRPPVA
001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA
Arabidopsis Description
bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.