Factsheet for Bra041033.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49420	Canola	nucleus	97.19	99.28
AT4G14410.1	Thale cress	nucleus	80.7	81.27
Bra023751.1-P	Field mustard	nucleus	38.25	69.87
Bra014923.1-P	Field mustard	nucleus	59.3	58.28
KRG90395	Soybean	cytosol, mitochondrion, nucleus	44.21	57.27
KRH31712	Soybean	cytosol, mitochondrion, nucleus	43.16	56.42
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	42.46	55.76
Solyc09g089870.2.1	Tomato	nucleus	44.21	55.75
PGSC0003DMT400044234	Potato	nucleus	42.81	53.98
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	22.81	45.45
GSMUA_Achr10P...	Banana	cytosol	22.81	44.83
Bra030459.1-P	Field mustard	nucleus	34.04	43.11
Bra022738.1-P	Field mustard	nucleus	35.09	42.55
Bra002964.1-P	Field mustard	nucleus	33.68	41.2
GSMUA_Achr10P...	Banana	plastid	25.26	39.56
Bra029011.1-P	Field mustard	nucleus	32.98	39.5
Os05t0455400-01	Rice	cytosol	19.65	37.84
EES18337	Sorghum	nucleus	31.93	37.76
Bra011658.1-P	Field mustard	cytosol	10.88	36.9
GSMUA_Achr2P16550_001	Banana	cytosol	29.47	36.52
HORVU1Hr1G072810.2	Barley	nucleus	30.18	36.13
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	30.18	35.83
TraesCS1B01G290500.1	Wheat	cytosol	30.18	35.54
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	29.82	35.27
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	31.93	31.93
Bra017745.1-P	Field mustard	nucleus	18.25	21.22

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra041033	EnsemblPlants:Bra041033.1	EnsemblPlants:Bra041033.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0046983
GO:GO:0071333	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4FIV4	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF72	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253EC1F
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

AT4G14410 (E=6e-102) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrScaffold000400:-:4282..5590

Molecular Weight (calculated)

32132.3 Da

IEP (calculated)

4.435

GRAVY (calculated)

-0.870

Length

285 amino acids

Sequence
(BLAST)

001: MYPSLDDEDF VSDFFCFDQS SNGAELDDYT QFGVDLQPDQ AGTFPDFGSY GVNLQNEPQQ VFNIGDLTSY GGVLTQEPGE FHNFGGPNDC GTVQEDEVVV
101: NSSSSGGAVK QEQEHVDEEC SRKRGRTGSC VRPGGTKACR ERLRREKLNE KFMDLSSVLE PGRTPKTDKP AILDDAIRVL NQLRDEAHEL EETNQKLLEE
201: IKSLKAEKNE LREEKQALKA EKEKTEQQLK SMMVPSTGFM PQIPTPFNQN KMAVYPSYGY MPMWHYLPQS VRDTSRDQEL RPPAA

Best Arabidopsis Sequence Match ( AT4G14410.1 )
(BLAST)

001: MYPSLDDDFV SDLFCFDQSN GAELDDYTQF GVNLQTDQED TFPDFVSYGV NLQQEPDEVF SIGASQLDLS SYNGVLSLEP EQVGQQDCEV VQEEEVEINS
101: GSSGGAVKEE QEHLDDDCSR KRARTGSCSR GGGTKACRER LRREKLNERF MDLSSVLEPG RTPKTDKPAI LDDAIRILNQ LRDEALKLEE TNQKLLEEIK
201: SLKAEKNELR EEKLVLKADK EKTEQQLKSM TAPSSGFIPH IPAAFNHNKM AVYPSYGYMP MWHYMPQSVR DTSRDQELRP PAA

Arabidopsis Description

BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.