Factsheet for Bra014923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77539	Canola	nucleus	98.62	98.62
Bra023751.1-P	Field mustard	nucleus	47.93	89.1
AT3G23210.1	Thale cress	nucleus	70.69	64.06
Bra041033.1-P	Field mustard	nucleus	58.28	59.3
Solyc09g089870.2.1	Tomato	nucleus	41.38	53.1
KRG90395	Soybean	cytosol, mitochondrion, nucleus	40.0	52.73
PGSC0003DMT400044234	Potato	nucleus	41.03	52.65
KRH31712	Soybean	cytosol, mitochondrion, nucleus	37.59	50.0
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	37.24	49.77
GSMUA_Achr10P...	Banana	cytosol	21.38	42.76
Bra022738.1-P	Field mustard	nucleus	33.79	41.7
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	20.34	41.26
Bra002964.1-P	Field mustard	nucleus	32.76	40.77
Bra030459.1-P	Field mustard	nucleus	30.69	39.56
Bra029011.1-P	Field mustard	nucleus	32.41	39.5
GSMUA_Achr10P...	Banana	plastid	23.1	36.81
Os05t0455400-01	Rice	cytosol	18.62	36.49
Bra011658.1-P	Field mustard	cytosol	10.34	35.71
EES18337	Sorghum	nucleus	28.62	34.44
GSMUA_Achr2P16550_001	Banana	cytosol	27.24	34.35
HORVU1Hr1G072810.2	Barley	nucleus	27.59	33.61
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	27.24	32.92
TraesCS1B01G290500.1	Wheat	cytosol	27.24	32.64
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	26.9	32.37
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	29.31	29.82
Bra017745.1-P	Field mustard	nucleus	17.93	21.22

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014923	EnsemblPlants:Bra014923.1	EnsemblPlants:Bra014923.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DEK1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF72	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002540ECB	InterPro:bHLH_dom	SEG:seg

Description

AT3G23210 (E=9e-074) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA07:+:5227880..5229233

Molecular Weight (calculated)

32409.9 Da

IEP (calculated)

4.586

GRAVY (calculated)

-0.753

Length

290 amino acids

Sequence
(BLAST)

001: MYQSNEDDDD FLAALWFDQS NGGEDPYAFI QTEQGNLFPE FGSSSGVNLQ TEQEQEQVCN NNNIGAQFDS FSGNNGLGPF GGVLYSSSIV EKEQELVCCG
101: VVEINSSSSV GGVKEELEEE CSRKRGRTGP CSKPGTKACR EKKRREMLND KFMDLSSFLE PTRTPKTDKP AILDDAIRVV NQLRGEAHEL KETNQKLLEE
201: IKTLKAEKNE LREEKLVLKA DKEKMEQQLK SMAAVPSPGF MPSHPAAFHQ NKMAVYASYG YYPNMPMMPY LLPPSQRDTS QDQQNCSFAA

Best Arabidopsis Sequence Match ( AT3G23210.1 )
(BLAST)

001: MYPSIEDDDD LLAALCFDQS NGVEDPYGYM QTNEDNIFQD FGSCGVNLMQ PQQEQFDSFN GNLEQVCSSF RGGNNGVVYS SSIGSAQLDL AASFSGVLQQ
101: ETHQVCGFRG QNDDSAVPHL QQQQGQVFSG VVEINSSSSV GAVKEEFEEE CSGKRRRTGS CSKPGTKACR EKLRREKLND KFMDLSSVLE PGRTPKTDKS
201: AILDDAIRVV NQLRGEAHEL QETNQKLLEE IKSLKADKNE LREEKLVLKA EKEKMEQQLK SMVVPSPGFM PSQHPAAFHS HKMAVAYPYG YYPPNMPMWS
301: PLPPADRDTS RDLKNLPPVA

Arabidopsis Description

BHLH34Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.