Factsheet for Solyc09g089870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044234	Potato	nucleus	94.69	94.69
KRG90395	Soybean	cytosol, mitochondrion, nucleus	60.62	62.27
KRH31712	Soybean	cytosol, mitochondrion, nucleus	59.73	61.93
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	53.54	55.76
Bra023751.1-P	Field mustard	nucleus	36.28	52.56
GSMUA_Achr10P...	Banana	cytosol	29.65	46.21
CDY49420	Canola	nucleus	55.75	45.16
AT4G14410.1	Thale cress	nucleus	56.19	44.88
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	28.32	44.76
Bra041033.1-P	Field mustard	nucleus	55.75	44.21
CDY12770	Canola	nucleus	55.31	44.01
Bra014923.1-P	Field mustard	nucleus	53.1	41.38
CDX77539	Canola	nucleus	53.1	41.38
Solyc10g006510.2.1	Tomato	nucleus	42.04	41.13
Solyc07g064040.2.1	Tomato	nucleus	42.04	40.77
GSMUA_Achr10P...	Banana	plastid	32.74	40.66
Solyc07g052670.2.1	Tomato	nucleus	42.92	39.75
HORVU1Hr1G072810.2	Barley	nucleus	41.59	39.5
EES18337	Sorghum	nucleus	42.04	39.42
TraesCS1B01G290500.1	Wheat	cytosol	42.04	39.26
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	41.59	39.17
GSMUA_Achr2P16550_001	Banana	cytosol	39.82	39.13
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	41.59	39.0
Os05t0455400-01	Rice	cytosol	24.78	37.84
CDY08983	Canola	nucleus	49.56	37.84
Solyc02g079970.2.1	Tomato	nucleus	38.5	37.83
AT3G23210.1	Thale cress	nucleus	53.54	37.81
CDX85069	Canola	nucleus	50.88	37.58
CDY35510	Canola	nucleus	48.67	37.41
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	42.04	33.33
Solyc01g111130.2.1	Tomato	nucleus	26.99	18.32

Protein Annotations

EnsemblPlants:Solyc09g089870.2.1	EnsemblPlantsGene:Solyc09g089870.2	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF72	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000276C953	UniProt:K4CW13	MapMan:15.5.32	MapMan:25.4.1.2	:

Description

No Description!

Coordinates

chr9:-:69490850..69495611

Molecular Weight (calculated)

26095.7 Da

IEP (calculated)

4.737

GRAVY (calculated)

-0.844

Length

226 amino acids

Sequence
(BLAST)

001: MDRFDSFRDA NWDLIDFNSF IDEESPIDFF WNDQTQDLSA VAEVEAPLSS AALQECIETE CPRKRGRNES CSKQGNKACR ERLRREKLNE RFSDLCSVLE
101: PGRPVKTDKM AILGDAIRVL NQLKTESEEY KEMNQKLMEE IKTLKEEKNE LREEKLALRA DKERMEQELK ATASPASFIP PHPAAYQPAV NKMAVFPSYG
201: YVPMWQYLQP SSRDTSQDHE LRPPAA

Best Arabidopsis Sequence Match ( AT4G14410.2 )
(BLAST)

001: MDVNLFGHDD SCSNGAELDD YTQFGVNLQT DQEDTFPDFV SYGVNLQQEP DEVFSIGASQ LDLSSYNGVL SLEPEQVGQQ DCEVVQEEEV EINSGSSGGA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA

Arabidopsis Description

BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.