Factsheet for Zm00001d038357_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18337	Sorghum	nucleus	78.25	92.53
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	70.18	83.33
TraesCS1D01G280600.1	Wheat	cytosol, mitochondrion, nucleus	69.82	82.57
TraesCS1B01G290500.1	Wheat	cytosol	69.82	82.23
HORVU1Hr1G072810.2	Barley	nucleus	68.42	81.93
Os05t0455400-01	Rice	cytosol	40.7	78.38
Zm00001d027911_P001	Maize	mitochondrion	20.35	61.05
GSMUA_Achr10P...	Banana	cytosol	29.47	57.93
GSMUA_Achr7P10830_001	Banana	cytosol, nucleus, plastid	28.42	56.64
GSMUA_Achr10P...	Banana	plastid	35.09	54.95
GSMUA_Achr2P16550_001	Banana	cytosol	42.81	53.04
KRG90395	Soybean	cytosol, mitochondrion, nucleus	35.09	45.45
VIT_05s0049g00460.t01	Wine grape	cytosol, nucleus, plasma membrane	34.39	45.16
KRH31712	Soybean	cytosol, mitochondrion, nucleus	34.39	44.95
Zm00001d014995_P001	Maize	nucleus	37.19	44.92
Zm00001d054038_P003	Maize	nucleus	36.49	44.83
Zm00001d021701_P002	Maize	nucleus	37.54	42.46
Solyc09g089870.2.1	Tomato	nucleus	33.33	42.04
VIT_14s0081g00720.t01	Wine grape	nucleus	31.23	41.2
PGSC0003DMT400044234	Potato	nucleus	32.63	41.15
Zm00001d024679_P002	Maize	nucleus	36.14	40.08
Bra023751.1-P	Field mustard	nucleus	21.75	39.74
Zm00001d046571_P001	Maize	cytosol	26.32	35.21
Zm00001d049384_P001	Maize	cytosol	25.96	34.74
Zm00001d046173_P001	Maize	nucleus	20.0	34.13
AT4G14410.1	Thale cress	nucleus	32.63	32.86
CDY49420	Canola	nucleus	31.93	32.62
CDY12770	Canola	nucleus	31.93	32.04
Bra041033.1-P	Field mustard	nucleus	31.93	31.93
Bra014923.1-P	Field mustard	nucleus	29.82	29.31
CDX77539	Canola	nucleus	29.47	28.97
AT3G23210.1	Thale cress	nucleus	32.28	28.75
CDY08983	Canola	nucleus	28.77	27.7
CDX85069	Canola	nucleus	29.47	27.45
CDY35510	Canola	nucleus	28.07	27.21
Zm00001d044216_P002	Maize	nucleus, plastid	23.16	20.89

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	UniProt:A0A1D6M5M9	ProteinID:AQK86395.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF78	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0001B36E77	EnsemblPlantsGene:Zm00001d038357	EnsemblPlants:Zm00001d038357_P001	EnsemblPlants:Zm00001d038357_T001	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

bHLH-transcription factor 118Transcription factor bHLH104

Coordinates

chr6:+:155275133..155277368

Molecular Weight (calculated)

31357.6 Da

IEP (calculated)

8.968

GRAVY (calculated)

-0.364

Length

285 amino acids

Sequence
(BLAST)

001: MSCAGQAGGW LLDYALVEEE IQGSEFIYMV DDPAVSSVIL GFDAPRKEDG VQDNPGAKKR QSFSSSFLSV DPQHKRKSVH ITLSPILLPL KSVGIICCAF
101: LFPFLLRRSR PESSAPPGTK ACREKLRRDR LNERFNELCA ILEPGKPPKA DKVAILSDAA RLLNQLQGEA QKLKQSNESL QESIKSLKAE KSELRDEKTR
201: LKAEKERLEQ MLKGVVSHAA VAAPGPFVPH PAAVAPSFHH HPAAFAQAGK FVPYPSYPPP AAFWQWIPPT SLDTTKDPAH WPPVA

Best Arabidopsis Sequence Match ( AT1G51070.1 )
(BLAST)

001: MVSPENTNWL SDYPLIEGAF SDQNPTFPWQ IDGSATVSVE VDGFLCDADV IKEPSSRKRI KTESCTGSNS KACREKQRRD RLNDKFTELS SVLEPGRTPK
101: TDKVAIINDA IRMVNQARDE AQKLKDLNSS LQEKIKELKD EKNELRDEKQ KLKVEKERID QQLKAIKTQP QPQPCFLPNP QTLSQAQAPG SKLVPFTTYP
201: GFAMWQFMPP AAVDTSQDHV LRPPVA

Arabidopsis Description

bHLH115Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I7Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.