Factsheet for Zm00001d054038_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29296	Sorghum	cytosol, mitochondrion, nucleus	93.97	94.37
Zm00001d014995_P001	Maize	nucleus	92.67	91.1
Os02t0116600-01	Rice	cytosol	77.59	76.27
TraesCS6D01G051600.2	Wheat	nucleus	73.71	68.95
TraesCS6B01G060700.2	Wheat	nucleus	71.98	67.34
TraesCS6A01G045100.1	Wheat	nucleus	65.95	63.22
GSMUA_Achr4P05310_001	Banana	nucleus	58.62	59.39
GSMUA_Achr4P05280_001	Banana	nucleus	57.33	58.08
GSMUA_Achr7P04180_001	Banana	nucleus	56.03	57.52
Zm00001d027911_P001	Maize	mitochondrion	23.28	56.84
Zm00001d024679_P002	Maize	nucleus	45.69	41.25
Zm00001d021701_P002	Maize	nucleus	41.81	38.49
Zm00001d046173_P001	Maize	nucleus	26.29	36.53
Zm00001d038357_P001	Maize	cytosol, nucleus, plastid	44.83	36.49
Zm00001d046571_P001	Maize	cytosol	31.47	34.27
Zm00001d049384_P001	Maize	cytosol	30.6	33.33
Zm00001d044216_P002	Maize	nucleus, plastid	26.72	19.62

Protein Annotations

EntrezGene:100274393	MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	ProteinID:AQK61093.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:K7UCG9	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF66
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002212B40	EnsemblPlantsGene:Zm00001d054038	EnsemblPlants:Zm00001d054038_P003	EnsemblPlants:Zm00001d054038_T003
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

bHLH-transcription factor 128Transcription factor bHLH104

Coordinates

chr4:+:245455225..245458068

Molecular Weight (calculated)

25506.5 Da

IEP (calculated)

6.294

GRAVY (calculated)

-0.642

Length

232 amino acids

Sequence
(BLAST)

001: MMNCAGGGDP VEDFLISGAV DDEDLAIFCD GGRLGIEGVN GDACGFEQSN LGKRGRDEPC SSGLKSKACR EKMRRDKLND RFLELSSVMN PGKQAKLDKA
101: NILSDAARMV AQLRGEAEKL KESNEKLREN IKDLKEEKNE LREEKVRLKV EKDRLEQQVK AMSVAPTGYV PHLPHPASYH PAAFAPFVPP QQAAGNKSAP
201: IPAPFPGMAM WQWLPPTIVD TTQDPKLWPP NA

Best Arabidopsis Sequence Match ( AT4G14410.2 )
(BLAST)

001: MDVNLFGHDD SCSNGAELDD YTQFGVNLQT DQEDTFPDFV SYGVNLQQEP DEVFSIGASQ LDLSSYNGVL SLEPEQVGQQ DCEVVQEEEV EINSGSSGGA
101: VKEEQEHLDD DCSRKRARTG SCSRGGGTKA CRERLRREKL NERFMDLSSV LEPGRTPKTD KPAILDDAIR ILNQLRDEAL KLEETNQKLL EEIKSLKAEK
201: NELREEKLVL KADKEKTEQQ LKSMTAPSSG FIPHIPAAFN HNKMAVYPSY GYMPMWHYMP QSVRDTSRDQ ELRPPAA

Arabidopsis Description

BHLH104Transcription factor bHLH104 [Source:UniProtKB/Swiss-Prot;Acc:Q8L467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.