CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d054038_P003	Maize	nucleus	94.37	93.97
Zm00001d014995_P001	Maize	nucleus	94.81	92.8
Os02t0116600-01	Rice	cytosol	80.52	78.81
TraesCS6D01G051600.2	Wheat	nucleus	77.06	71.77
TraesCS6B01G060700.2	Wheat	nucleus	75.32	70.16
TraesCS6A01G045100.1	Wheat	nucleus	67.97	64.88
GSMUA_Achr4P05310_001	Banana	nucleus	58.44	58.95
GSMUA_Achr4P05280_001	Banana	nucleus	57.58	58.08
GSMUA_Achr7P04180_001	Banana	nucleus	56.28	57.52
EES18337	Sorghum	nucleus	45.89	43.98
KXG24376	Sorghum	nucleus	45.45	42.0
EER99495	Sorghum	nucleus	40.69	37.01
EES03283	Sorghum	nucleus	25.97	18.99

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	UniProt:A0A194YM80	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KXG29296	ProteinID:KXG29296	ProteinID:KXG29296.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF66	SMART:SM00353	EnsemblPlantsGene:SORBI_3004G012100	SUPFAM:SSF47459	UniParc:UPI000220723A	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:998391..1001234

Molecular Weight (calculated)

25272.1 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.680

Length

231 amino acids

Sequence
(BLAST)

001: MDCAVGGDPV EDFLLGGAGD DGDLAIFCDG GRLGIEGVNG DACGFDQSNL GKRGRDEPSS SGPKSKACRE KMRRDKLNDR FLELSSVMNP GKQAKLDKAN
101: ILSDAARMVA QLRGEAEKLK ESNEKLRENI KDLKEEKNEL REEKVRLKVE KDRLEQQVKA MSVAPTGYVP HLPHPASYHP AAFTPFVPPQ QAPANKSAPI
201: PAAFPGMAMW QWLPPTIVDT TQDPKLWPPN A

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.