CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024679_P002	Maize	nucleus	98.0	95.33
Zm00001d027911_P001	Maize	mitochondrion	33.2	87.37
TraesCS7D01G304500.1	Wheat	nucleus	82.0	85.42
TraesCS7B01G208000.1	Wheat	nucleus	81.2	84.58
TraesCS7A01G307700.1	Wheat	nucleus	81.2	84.58
Os08t0138500-01	Rice	nucleus	84.0	83.0
Zm00001d046173_P001	Maize	nucleus	52.8	79.04
HORVU7Hr1G073310.5	Barley	cytosol	76.4	77.33
Zm00001d046571_P001	Maize	cytosol	65.2	76.53
Zm00001d049384_P001	Maize	cytosol	64.8	76.06
GSMUA_Achr10P...	Banana	cytosol	33.2	64.84
GSMUA_Achr3P23080_001	Banana	nucleus	54.0	58.7
GSMUA_Achr8P33180_001	Banana	nucleus	48.4	53.54
EER99495	Sorghum	nucleus	52.8	51.97
GSMUA_Achr11P...	Banana	cytosol	34.4	46.99
KXG29296	Sorghum	cytosol, mitochondrion, nucleus	42.0	45.45
EES18337	Sorghum	nucleus	40.8	42.32
EES03283	Sorghum	nucleus	26.4	20.89

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.2	Gene3D:4.10.280.10	UniProt:A0A1B6PFC8	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KXG24376	ProteinID:KXG24376	ProteinID:KXG24376.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR23042
PANTHER:PTHR23042:SF60	SMART:SM00353	EnsemblPlantsGene:SORBI_3007G033800	SUPFAM:SSF47459	UniParc:UPI0001C80D5D	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:2956101..2959249

Molecular Weight (calculated)

27424.5 Da

IEP (calculated)

5.046

GRAVY (calculated)

-0.663

Length

250 amino acids

Sequence
(BLAST)

001: MSLPPDGGGG TGDDWFLDCG ILDDLPAAAC GAFPWDASPS SSNPSVEVGS YVNTNDVFKE PNDVFKEPGS NKRLRSGSND VPTSKASREK MRRNKLNDRF
101: LELGSTLEPG KPVKADKAAI LSDATRMVIQ LRSEAQQLKE TNGSLEEKIK ELKAEKDELR DEKQKLKLEK ESLEHQMKLM TSTPAYMPHP TLMPAPFPQA
201: PLAPFHAQGQ AAGQKLMMPF VSYPGYPMWQ FMPPSEVDTS KDSEACPPVA

Best Arabidopsis Sequence Match ( AT5G54680.1 )
(BLAST)

001: MVSPENANWI CDLIDADYGS FTIQGPGFSW PVQQPIGVSS NSSAGVDGSA GNSEASKEPG SKKRGRCESS SATSSKACRE KQRRDRLNDK FMELGAILEP
101: GNPPKTDKAA ILVDAVRMVT QLRGEAQKLK DSNSSLQDKI KELKTEKNEL RDEKQRLKTE KEKLEQQLKA MNAPQPSFFP APPMMPTAFA SAQGQAPGNK
201: MVPIISYPGV AMWQFMPPAS VDTSQDHVLR PPVA

Arabidopsis Description

ILR3Transcription factor ILR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH37]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.