CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044216_P002	Maize	nucleus, plastid	94.3	94.3
TraesCS6A01G204300.1	Wheat	nucleus	68.99	67.49
Os02t0433600-01	Rice	nucleus	72.78	67.06
TraesCS6D01G185100.1	Wheat	cytosol	65.19	63.78
TraesCS6B01G220300.1	Wheat	nucleus	59.81	63.42
Bra011658.1-P	Field mustard	cytosol	15.82	59.52
KRH13089	Soybean	nucleus	45.57	51.25
KRH24147	Soybean	nucleus	43.35	49.82
KRH43415	Soybean	nucleus	43.99	49.12
VIT_03s0038g01790.t01	Wine grape	nucleus	50.32	48.33
Solyc01g111130.2.1	Tomato	nucleus	49.05	46.55
PGSC0003DMT400004039	Potato	nucleus	49.05	46.41
CDX72574	Canola	nucleus	33.86	43.67
Bra017745.1-P	Field mustard	nucleus	33.23	42.86
CDY47051	Canola	nucleus	32.28	41.63
CDY68426	Canola	nucleus	30.7	38.19
AT4G36060.3	Thale cress	nucleus, plastid	29.11	32.06
EES18337	Sorghum	nucleus	20.57	26.97
KXG24376	Sorghum	nucleus	20.89	26.4
KXG29296	Sorghum	cytosol, mitochondrion, nucleus	18.99	25.97
EER99495	Sorghum	nucleus	19.62	24.41

Protein Annotations

MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	EntrezGene:8054388	UniProt:C5XR28	ncoils:Coil
EnsemblPlants:EES03283	ProteinID:EES03283	ProteinID:EES03283.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR23042	PANTHER:PTHR23042:SF59	SMART:SM00353	EnsemblPlantsGene:SORBI_3003G221900	SUPFAM:SSF47459	unigene:Sbi.17523
UniParc:UPI0001A85008	RefSeq:XP_002458163.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:55749618..55755477

Molecular Weight (calculated)

34514.1 Da

IEP (calculated)

7.026

GRAVY (calculated)

-0.885

Length

316 amino acids

Sequence
(BLAST)

001: MSSSGPLPAT GTHHGSQRAE CKAQGSTSAR KVQKADREKM RRDKLNEQFQ DLGNALDPDR PRNDKATILG DTIQMLKDLT TQVNKLKAEY TSLSEEAREL
101: TQEKNELRDE KASLKSEVDN LNNQYQQRMR VLYPWAGMEP SVVMGPPPAY PYPVPVHIPS GAVPMHPQLQ TYPFFHSQTS GTIPNACIPY MAYTQPCHLP
201: TDQPSNQLNT PVGHSSSHRS NSPAQDCRSK SSTPQQPSCG MRSSDVGDIA TDLELKTPGS SCQSHSEIAN NDSSSDLKTK KHCIKQINGC TLTESSSSSR
301: CSSSGPPDVS NSAVDE

Best Arabidopsis Sequence Match ( AT3G19860.1 )
(BLAST)

001: MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ
101: YQQRLRSMSP WGAAMDHTVM MAPPPSFPYP MPIAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ SVHIPQNPGN RSREPRAKVS
201: RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR CKRNNNNNSI EESSHSSKCS SSPSVRDHSS SSSVAGGQKP DDAK

Arabidopsis Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.