Factsheet for TraesCS6A01G204300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G185100.1	Wheat	cytosol	94.43	94.43
TraesCS6B01G220300.1	Wheat	nucleus	82.97	89.93
EES03283	Sorghum	nucleus	67.49	68.99
Zm00001d044216_P002	Maize	nucleus, plastid	66.25	67.72
Os02t0433600-01	Rice	nucleus	70.28	66.18
Bra011658.1-P	Field mustard	cytosol	13.93	53.57
KRH13089	Soybean	nucleus	43.03	49.47
KRH24147	Soybean	nucleus	40.25	47.27
KRH43415	Soybean	nucleus	40.25	45.94
VIT_03s0038g01790.t01	Wine grape	nucleus	46.75	45.9
Solyc01g111130.2.1	Tomato	nucleus	44.58	43.24
PGSC0003DMT400004039	Potato	nucleus	44.58	43.11
CDX72574	Canola	nucleus	29.41	38.78
Bra017745.1-P	Field mustard	nucleus	28.79	37.96
CDY47051	Canola	nucleus	28.48	37.55
CDY68426	Canola	nucleus	28.17	35.83
AT4G36060.3	Thale cress	nucleus, plastid	27.55	31.01
TraesCS7A01G307700.1	Wheat	nucleus	19.81	26.67
TraesCS6A01G045100.1	Wheat	nucleus	19.5	26.03
TraesCS2A01G215600.1	Wheat	nucleus	19.2	24.7
TraesCS1A01G281300.1	Wheat	cytosol, mitochondrion, nucleus	17.96	24.17

Protein Annotations

EnsemblPlants:TraesCS6A01G204300.1	EnsemblPlantsGene:TraesCS6A01G204300	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR23042	PANTHER:PTHR23042:SF59	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	MapMan:25.4.1.4	:	:

Description

No Description!

Coordinates

chr6A:-:355398725..355408051

Molecular Weight (calculated)

35405.1 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.745

Length

323 amino acids

Sequence
(BLAST)

001: MDPQEDGFFY SHHGACHADS SQGTECKAQS SVTARKVHKA DRERMRRDKL NEQFLELGTT LDPDRPRHDK ATILGDTVQM LKDLTSQVNK LKAEYSSLFE
101: EECELTKEKN ELRSEKASLK SDVDNLNNHY QQRIQMLYLC TTMEPSVLVG PPPSYPFSLQ VPIPAGAVTM HPQLQPCPFF QNQTSGAISN PCTPYMAYSQ
201: SCHAPSDQPS SQFSTPVLLS SSNRSHSPAQ GCRSKSPSLQ QASCGGRNDD FGDVATDLEL KTPGSSAPSH SEITNKDSSS DLKMKKQCIK LINGSTLIED
301: SSSSRCSSSA PPHNSSSVLA EDQ

Best Arabidopsis Sequence Match ( AT3G19860.1 )
(BLAST)

001: MDVSARKSQK AGREKLRREK LNEHFVELGN VLDPERPKND KATILTDTVQ LLKELTSEVN KLKSEYTALT DESRELTQEK NDLREEKTSL KSDIENLNLQ
101: YQQRLRSMSP WGAAMDHTVM MAPPPSFPYP MPIAMPPGSI PMHPSMPSYT YFGNQNPSMI PAPCPTYMPY MPPNTVVEQQ SVHIPQNPGN RSREPRAKVS
201: RESRSEKAED SNEVATQLEL KTPGSTSDKD TLQRPEKTKR CKRNNNNNSI EESSHSSKCS SSPSVRDHSS SSSVAGGQKP DDAK

Arabidopsis Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.