Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011658.1-P | Field mustard | cytosol | 28.35 | 85.71 |
| CDX72574 | Canola | nucleus | 71.65 | 74.29 |
| CDY47051 | Canola | nucleus | 69.69 | 72.24 |
| AT4G36060.3 | Thale cress | nucleus, plastid | 53.54 | 47.39 |
| KRH13089 | Soybean | nucleus | 39.76 | 35.94 |
| KRH24147 | Soybean | nucleus | 38.19 | 35.27 |
| KRH43415 | Soybean | nucleus | 37.4 | 33.57 |
| Solyc01g111130.2.1 | Tomato | nucleus | 43.7 | 33.33 |
| PGSC0003DMT400004039 | Potato | nucleus | 43.31 | 32.93 |
| VIT_03s0038g01790.t01 | Wine grape | nucleus | 40.94 | 31.61 |
| CDY42214 | Canola | mitochondrion, nucleus | 40.94 | 31.14 |
| EES03283 | Sorghum | nucleus | 38.19 | 30.7 |
| Zm00001d044216_P002 | Maize | nucleus, plastid | 36.61 | 29.43 |
| CDY33424 | Canola | nucleus | 41.34 | 28.77 |
| TraesCS6B01G220300.1 | Wheat | nucleus | 33.46 | 28.52 |
| TraesCS6A01G204300.1 | Wheat | nucleus | 35.83 | 28.17 |
| Os02t0433600-01 | Rice | nucleus | 37.01 | 27.41 |
| TraesCS6D01G185100.1 | Wheat | cytosol | 33.86 | 26.63 |
| CDY47456 | Canola | nucleus | 20.08 | 21.89 |
| CDY42475 | Canola | nucleus | 20.08 | 21.89 |
| CDY43028 | Canola | nucleus | 20.47 | 21.85 |
| CDY41004 | Canola | nucleus | 19.68 | 21.28 |
| CDY28758 | Canola | nucleus | 19.68 | 21.28 |
| CDY43809 | Canola | nucleus | 19.68 | 21.01 |
| CDY35576 | Canola | nucleus | 18.11 | 20.18 |
| CDY71937 | Canola | cytosol, nucleus | 17.32 | 20.09 |
| CDX77539 | Canola | nucleus | 19.29 | 16.9 |
| CDY49420 | Canola | nucleus | 18.5 | 16.85 |
| CDY12770 | Canola | nucleus | 18.5 | 16.55 |
| CDY35510 | Canola | nucleus | 18.5 | 15.99 |
| CDX85069 | Canola | nucleus | 18.9 | 15.69 |
| CDY08983 | Canola | nucleus | 18.11 | 15.54 |
Protein Annotations
| MapMan:15.5.32 | MapMan:25.4.1.4 | Gene3D:4.10.280.10 | GO:A0A078JS07 | UniProt:A0A078JS07 | EnsemblPlants:CDY68426 |
| ProteinID:CDY68426 | ProteinID:CDY68426.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00074199001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR23042 | PANTHER:PTHR23042:SF73 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE2814 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaC01g40740DBnaC01g40740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS07]
Coordinates
chrLK037319:-:4131..5248
Molecular Weight (calculated)
28196.2 Da
IEP (calculated)
6.637
GRAVY (calculated)
-0.708
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLKKLKTS SDDESSTASS SWGHNISFRP EKMVDGKEEP VSSRKIQKAE REKIRRDKLK KHVFELGDAL DPNRPKSDKA SILIDTVQIL KDLMTQVDRL
101: KAEYVTLSQE SRELNQDKSE LREENSSLKS DIEILSAQCQ HRVMVPWIPH YAYPLPVVAI TQGQVSTLPS LLNGTQTPSP LPNPSTTFMP YLAASLGPKM
201: ERKDDVGLEL ELKIHASSSA HDASGKEEKG NSTVTASSSN SYYSSSHAVQ DCSP
101: KAEYVTLSQE SRELNQDKSE LREENSSLKS DIEILSAQCQ HRVMVPWIPH YAYPLPVVAI TQGQVSTLPS LLNGTQTPSP LPNPSTTFMP YLAASLGPKM
201: ERKDDVGLEL ELKIHASSSA HDASGKEEKG NSTVTASSSN SYYSSSHAVQ DCSP
001: MDQPMKPKTC SESDFADDSS ASSSSSSGQN LRGAEMVVEV KKEAVCSQKA EREKLRRDKL KEQFLELGNA LDPNRPKSDK ASVLTDTIQM LKDVMNQVDR
101: LKAEYETLSQ ESRELIQEKS ELREEKATLK SDIEILNAQY QHRIKTMVPW VPHYSYHIPF VAITQGQSSF IPYSASVNPL TEQQASVQQH SSSSADASMK
201: QDSKIKPLDL DLMMNSNHSG QGNDQKDDVR LKLELKIHAS SLAQQDVSGK EKKVSLTTTA SSSNSYSLSQ AVQDSSPGTV NDMLKP
101: LKAEYETLSQ ESRELIQEKS ELREEKATLK SDIEILNAQY QHRIKTMVPW VPHYSYHIPF VAITQGQSSF IPYSASVNPL TEQQASVQQH SSSSADASMK
201: QDSKIKPLDL DLMMNSNHSG QGNDQKDDVR LKLELKIHAS SLAQQDVSGK EKKVSLTTTA SSSNSYSLSQ AVQDSSPGTV NDMLKP
Arabidopsis Description
bHLH11basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G36060]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.