Factsheet for PGSC0003DMT400004039

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111130.2.1	Tomato	nucleus	96.41	96.7
KRH13089	Soybean	nucleus	53.59	63.7
KRH24147	Soybean	nucleus	51.5	62.55
VIT_03s0038g01790.t01	Wine grape	nucleus	60.78	61.7
Bra011658.1-P	Field mustard	cytosol	15.27	60.71
KRH43415	Soybean	nucleus	49.1	57.95
EES03283	Sorghum	nucleus	46.41	49.05
Zm00001d044216_P002	Maize	nucleus, plastid	45.21	47.78
Os02t0433600-01	Rice	nucleus	48.8	47.52
Bra017745.1-P	Field mustard	nucleus	34.43	46.94
CDX72574	Canola	nucleus	34.13	46.53
CDY47051	Canola	nucleus	33.23	45.31
TraesCS6A01G204300.1	Wheat	nucleus	43.11	44.58
TraesCS6B01G220300.1	Wheat	nucleus	39.22	43.96
CDY68426	Canola	nucleus	32.93	43.31
TraesCS6D01G185100.1	Wheat	cytosol	41.02	42.41
AT4G36060.3	Thale cress	nucleus, plastid	30.84	35.89
PGSC0003DMT400049592	Potato	nucleus	20.36	29.18
PGSC0003DMT400044234	Potato	nucleus	18.86	27.88
PGSC0003DMT400067294	Potato	nucleus	20.36	27.87
PGSC0003DMT400037405	Potato	nucleus	19.16	27.71
PGSC0003DMT400055907	Potato	nucleus	18.56	26.96

Protein Annotations

EntrezGene:102583791	MapMan:15.5.32	MapMan:25.4.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0043565	GO:GO:0046983
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0ZMS4	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400001594
PGSC:PGSC0003DMG400001594	EnsemblPlants:PGSC0003DMT400004039	PFscan:PS50888	PANTHER:PTHR23042	PANTHER:PTHR23042:SF59	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000295C7A0	RefSeq:XP_006359649.1	InterPro:bHLH_dom	SEG:seg	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001594]

Coordinates

chr1:-:87188134..87192632

Molecular Weight (calculated)

37304.7 Da

IEP (calculated)

6.803

GRAVY (calculated)

-0.967

Length

334 amino acids

Sequence
(BLAST)

001: MDQLNHGGLY QPNQLPNHCL TELNQLPSDV SMPPNGLHSE SSSKQKPEAE LKDSIAARKV QKADREKLRR DRLNEQFLEL GKTLDPERPK NDKASILSDT
101: VQMLKDLTAQ VSRLKSEYAA LTDESRELTQ EKNDLREEKA SLKSDIESLN VQYQQRMRTM YPWAGMDHSM VMHPPSYPYP MPVPVPTGPV PMHPSLQPYP
201: FFGNHNPAVV PNPSSFVQYM TPNTLIEQQP TQYMSPIIQP GSMTRQESRN KSSDQGESRI EKSEDSNEVA TDLELKTPGS TSEQDLSSGQ KKSRKLPRKD
301: NSLTDGSSSS KCSSSHSVHA VSSNSVVRGT KTGD

Best Arabidopsis Sequence Match ( AT3G19860.2 )
(BLAST)

001: MGIRENGIML VSRERERARR LENRESIFAE PPCLLLAHRI SPSPSILPAE EEVMDVSARK SQKAGREKLR REKLNEHFVE LGNVLDPERP KNDKATILTD
101: TVQLLKELTS EVNKLKSEYT ALTDESRELT QEKNDLREEK TSLKSDIENL NLQYQQRLRS MSPWGAAMDH TVMMAPPPSF PYPMPIAMPP GSIPMHPSMP
201: SYTYFGNQNP SMIPAPCPTY MPYMPPNTVV EQQSVHIPQN PGNRSREPRA KVSRESRSEK AEDSNEVATQ LELKTPGSTS DKDTLQRPEK TKRCKRNNNN
301: NSIEESSHSS KCSSSPSVRD HSSSSSVAGG QKPDDAK

Arabidopsis Description

BHLH121Transcription factor bHLH121 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT23]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.